Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq29607 82.4 4e-11 seq1495 82.4 4e-11 >seq29607 Length=52575 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 41218 GGATCGAACCCACGACCTTAGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 41159 Query 11528 CC 11529 || Sbjct 41158 CC 41157 >seq1495 Length=784738 Score = 82.4 bits (90), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAA-TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || ||||| ||| ||||| ||| | ||||| || |||||||||| |||||| | Sbjct 567598 AACATAGATATAACTAAAATATCTGAGTGGCCGATATGGGGATCGAACCCACGACCTCAG 567657 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||| |||||||||||||| |||| Sbjct 567658 CGTTATTAGCACCGCGCTCTAACCAACTGAGCTAACCGGCC 567698 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261318723673120