Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_006879.1 Length=34450 Score E Sequences producing significant alignments: (Bits) Value seq7310 488 1e-133 >seq7310 Length=770 Score = 488 bits (540), Expect = 1e-133 Identities = 515/676 (76%), Gaps = 8/676 (1%) Strand=Plus/Plus Query 10585 GGTGAGCGCGTACGAGCAGACGGTGAACGAGGAGCGCAACTTCCAAAAGAGCTTTAACAA 10644 ||| | ||||||||| || ||||||||| ||||| ||||| | || ||||||| ||| Sbjct 59 GGTAACCGCGTACGAACACACGGTGAACCAGGAGATTAACTTTCTGAA-AGCTTTACCAA 117 Query 10645 TCACGTGAGGACCCTGATCGCGAGGGAGGAGGTGACCATCGGGCTGATGCATCTGTGGGA 10704 |||||| | || || | || | ||||||||| | || | ||||||||||||||||| Sbjct 118 CCACGTGCGCACGCTTGTGGCACGCGAGGAGGTGGCTATACGACTGATGCATCTGTGGGA 177 Query 10705 CTTCGTGGAGGCCTACGTGCAGAACCCGGCCAGCAAACCTCTGACGGCCCAGCTGTTCCT 10764 ||| || || | ||| ||||| ||||| || || | ||| ||||||||||| Sbjct 178 CTTTGTAATCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 237 Query 10765 GATCGTGCAGCACAGCCGCGACAACGAGACGTTCCGCGACGCCATGTTGAACATCGCGGA 10824 || |||||||||| | | ||||||||| | ||| | || || || | ||||| | || Sbjct 238 TATAGTGCAGCACACCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 297 Query 10825 GCCCGAGGGTCGCTGGCTCTTGGATCTGATTAACATCCTGCAGAGCATCGTGGTGCAGGA 10884 ||||||||| |||||||| | ||| |||| ||||| ||||||||||| ||||||||||| Sbjct 298 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 357 Query 10885 GAGGGGCCTCAGCTTAGCGGACAAGGTGGCGGCCATTAACTATTCGATGCAGAGCCTGGG 10944 | | || | ||| | || ||||||||||| |||||||||||||| |||| || ||||| Sbjct 358 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 417 Query 10945 GAAGTTCTACGCTCGCAAGATCTACAAGAGCCCTTACGTGCCCATAGACAAGGAGGTGAA 11004 ||||| ||||| |||||||| ||| | | ||||||||| ||||||||||||||||| || Sbjct 418 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 477 Query 11005 GATAGACAGCTTTTACATGCGCATGGCGCTGAAGGTGCTGACGCTGAGCGACGACCTCGG 11064 ||| || | || ||||||||||||||| |||||||||| || ||||||||||||| | Sbjct 478 GATCGAGGGGTTCTACATGCGCATGGCGTTGAAGGTGCTTACCTTGAGCGACGACCTGAG 537 Query 11065 CGTGTACCGTAACGACAAGATCCAC-AAGGCGGTGAGCGCCAGCCGCCGGCGGGAGCTGA 11123 ||| || || ||||| |||||| ||||| ||||||| ||||| ||||| ||||| | Sbjct 538 CGTTTATCGCAACGAGCGCATCCACAAAGGCCGTGAGCGTGAGCCGGCGGCGCGAGCTCA 597 Query 11124 GCGACAGGGAGCTGATGCACAGCCTGCAGAGGGCGCTGG------CGGGCGCCGGGGACG 11177 ||||| | |||||||||||||||||||| ||||| |||| ||||| ||| || Sbjct 598 GCGACCGCGAGCTGATGCACAGCCTGCAAAGGGCCCTGGCTGGCACGGGCAGCGGCGATA 657 Query 11178 AGGAGCGCGAGGCTTACTTCGACATGGGAGCCGATCTGCAGTGGCGTCCCAGCGCGCGCG 11237 ||| |||| | ||||| ||| ||| || || |||| ||| || ||| |||| Sbjct 658 GAGAGGCCGAGTCCTACTTTGACGCGGGCGCTGACCTGCGCTGGGCCCCAAGCCTACGCG 717 Query 11238 CCTTGGAGGCGGCGGG 11253 || || | || || || Sbjct 718 CCCTGTAAGCAGCTGG 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110047629657280