Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3179 289 3e-73 seq1 89.7 5e-13 seq51641 87.8 2e-12 >seq3179 Length=6207 Score = 289 bits (320), Expect = 3e-73 Identities = 606/899 (67%), Gaps = 20/899 (2%) Strand=Plus/Plus Query 21169 tGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCC 21228 |||||| | ||| ||| ||||| |||| ||||||| ||||||||||| | || ||||| Sbjct 3070 TGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCC 3129 Query 21229 TTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACA 21288 ||| | ||| || ||||| |||| || ||||| | | || |||| |||| || Sbjct 3130 TTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCA 3189 Query 21289 ACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 | ||||| || | |||||| || | ||||| |||||||| |||| | || Sbjct 3190 GTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGC 3249 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 || || || ||||| | || | ||||| ||||||||| |||||| || ||| Sbjct 3250 GTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGAC 3309 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGA-TGTACTAGGGGGAT--ACAATAATTGTTT 21465 |||||| |||| || || | || | | ||| || | ||||| || ||| Sbjct 3310 TGCTTCATCAATAAT-TTGACAATGTTTTTCTTTACACGGCTTGTTAACAAT--TTTTTT 3366 Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525 |||||||||||||||||||| ||||| ||||||||||||||| || | |||||| || Sbjct 3367 CAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGA 3426 Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585 ||| || |||||| | | | ||| | || ||| ||||||||| | |||||| || Sbjct 3427 AAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACC 3486 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||||| || || || |||||||| || || || || | || |||||||| || | | Sbjct 3487 CGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGG---C 3543 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATC--AATTGTA 21703 | | | ||||| ||| |||||| | |||||| | | ||| || || ||| Sbjct 3544 GTCCGACGAGATCCAATTTAAAGCCCATGTGGCCTTT--TGTCCGACAGTCGGAAATGTT 3601 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || || || || || ||||||| ||| ||| Sbjct 3602 TCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAAC 3661 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||||||||||| || || | ||||| |||||| | ||||| ||| ||| || | Sbjct 3662 AGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATA 3721 Query 21824 GCCT-CTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 || | | | || | || | | |||| || | || |||| | || ||||| Sbjct 3722 GCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATTTTTAGCAACAATTCC 3777 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 |||||| | |||||||||||||||||||| | ||||||| | ||| ||||| | | Sbjct 3778 ATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAG 3837 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 ||| |||| || | |||||||| |||| ||| ||||| || |||| | | Sbjct 3838 ATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGAC 3897 Query 22003 AATAGC--CTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || || ||||||||||| ||||| ||||||| |||| |||||||||| |||||||| Sbjct 3898 AAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 >seq1 Length=778493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 21131 AAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGA 21190 |||||||| |||| || ||| ||||| | |||||| | |||||| || ||| Sbjct 568369 AAATCAGCCTCTAGTGTGAATTTGTTATCGCAGGGTGATGACATTACTCCCATCTTCTGA 568310 Query 21191 TAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATA 21250 || || | ||| | |||||| ||||| |||||||||||||| | ||| || |||||| Sbjct 568309 TATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCTTCAAGTGAAATGTTTTCCATG 568250 Query 21251 AAATCAAATGGATTTTC 21267 || ||||| |||||||| Sbjct 568249 AAGTCAAAGGGATTTTC 568233 >seq51641 Length=269637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 21551 CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCA 21610 || ||||| ||||| |||||||| ||||| |||||||||||||| || || || || ||| Sbjct 49181 CTTTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCA 49122 Query 21611 GCAAATGCAACTAATCGTTCACC 21633 |||||||| || | || |||||| Sbjct 49121 GCAAATGCCACAAGTCTTTCACC 49099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531540969108800