Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3179 266 4e-66 seq51498 141 1e-28 seq51641 107 2e-18 seq43701 102 1e-16 seq12393 100 4e-16 seq1 100 4e-16 >seq3179 Length=6207 Score = 266 bits (294), Expect = 4e-66 Identities = 615/914 (67%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 32979 AAAATGATTATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 33038 |||||||| || || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 33039 GAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAAC 33098 ||||||| ||||||||||||| | ||| || | |||||||||| ||||||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 33099 ATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCCGCGACGAATTCTATAT 33157 || || || || | | | | ||| || || || |||||| || | |||||| |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 33158 ATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCGCAGTAAGA 33216 || ||||| || || ||||| || |||| | | || ||| | || | | Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAA-AGCTTCTGTCAAA 3289 Query 33217 AATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG- 33275 || |||| |||||| || || || ||||| | | |||||| || ||| Sbjct 3290 AACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGC 3349 Query 33276 -TGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTC 33334 || |||| | ||| |||||||||||||| |||||||| || | ||| || || | Sbjct 3350 TTGTTAACAATT--TTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCC 3407 Query 33335 TACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 33394 || ||| ||||| || ||||| || | ||| | | | || || | ||||||| Sbjct 3408 TAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAA 3467 Query 33395 ATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 |||| | | ||||| || ||||| || || ||||| || || || || || | || | Sbjct 3468 ATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC 3527 Query 33455 TCTCTCCATAACCGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33513 ||| || || |||| | | | | ||||| ||| |||||| |||||| | | Sbjct 3528 GCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG 3586 Query 33514 ACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 33573 ||| || | ||||| || || || || || ||||||| | ||| || Sbjct 3587 ACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATG 3646 Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || || || || || || |||||||||||||| || | |||||| || || | ||||| Sbjct 3647 TACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAAC 3706 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCCGCCAAATT 33692 ||||||| || |||| || | | ||| | || | | |||| || | ||||| Sbjct 3707 GAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATT 3762 Query 33693 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33752 || | || ||||| ||||| | |||||||| ||||||| |||| ||||||| | Sbjct 3763 TTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCT 3822 Query 33753 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 ||| | | || || |||| || ||| ||||||||||| ||| ||||| ||||| Sbjct 3823 TTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCAC 3882 Query 33813 TGTCCAAAATGATGCCTCTGC--CTTTTTATACATGTTCCAGATGTCATAATATTGGATT 33870 |||| |||| | ||| |||||||||||| |||| || |||| ||||| ||| Sbjct 3883 ACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATT 3942 Query 33871 GGGAAAATAACAAA 33884 || ||||| ||||| Sbjct 3943 GGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || | |||||| |||| | | ||||||||||||| ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| ||| || || || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 |||||||| | ||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 || || | |||||| ||||||||||| ||||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 |||||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||| ||||| ||||| || ||| |||| |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 9959 GCATACCA 9952 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || ||||| || |||| || || |||||||| || || ||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 62457 CTATT 62461 ||||| Sbjct 12389 CTATT 12385 >seq51641 Length=269637 Score = 107 bits (118), Expect = 2e-18 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||| | ||| ||||| || || || | ||| ||||||||||||||||| ||||||||| Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTC--ATGTATCCACTTTTGAGCCCAA 33498 || || | |||||| || ||| ||| | | || | || ||||||| | ||||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCAA 49059 Query 33499 TCGGCCTTCTTTTTTACACAAGGCA 33523 || || || ||||| |||||||||| Sbjct 49058 TCAGCTTTTTTTTTAACACAAGGCA 49034 >seq43701 Length=19211 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 >seq12393 Length=14882 Score = 100 bits (110), Expect = 4e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 |||||||| ||||| ||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT- 63064 ||||| ||||| ||||| || ||| |||| ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 63065 CGCTT 63069 ||||| Sbjct 1014 CGCTT 1018 >seq1 Length=778493 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || |||||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 || | ||| || ||||||||||| ||||| ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33573 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 ||| ||||| ||||||||||| ||||| || |||||||||||||| || || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 33633 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || ||||| | || || |||| |||| |||| || |||||| || Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTC 566460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622525776219200