Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3179 293 3e-74 seq51498 145 1e-29 seq43701 105 8e-18 seq12393 100 4e-16 seq1 96.9 4e-15 >seq3179 Length=6207 Score = 293 bits (324), Expect = 3e-74 Identities = 621/914 (68%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 32336 AAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 32395 |||||||| ||| || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 32396 GAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAAC 32455 ||||||| ||||||| ||||| | ||| || | |||||||||| ||| |||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 32456 ATTATAAAtttttttAAATCCCAATT-CAGAAATCAATCTATCTGCGACAAATTCTATAT 32514 || || || || | | | | || ||| || || |||||| || | ||||| |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 32515 ATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGA 32573 || ||||| || || ||||| || |||| | || | ||| | || | | Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTC-GGTAAAGCTTCTGTCAAA 3289 Query 32574 AATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG- 32632 || |||| |||||| ||| || || ||||| | | |||||| || ||| Sbjct 3290 AACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGC 3349 Query 32633 -TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTC 32691 || ||||| | ||| |||||||||||||| |||||||| |||| ||| || || | Sbjct 3350 TTGTTAACAAT--TTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCC 3407 Query 32692 TACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 32751 || ||| | ||| || ||||| || | ||| | | | || || | ||||||| Sbjct 3408 TAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAA 3467 Query 32752 ATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 32811 |||| | ||||||| || ||||| || || ||||| || ||||| || || | || | Sbjct 3468 ATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC 3527 Query 32812 TCTCTCCATAACCGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 32870 ||| || || |||| | | | | ||||| ||| |||||| |||||| | | Sbjct 3528 GCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG 3586 Query 32871 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 32930 ||| || | ||| || || || || || || ||||||| | ||| || Sbjct 3587 ACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATG 3646 Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || ||||| || || |||||||||||||| || | |||||| || || ||||||| Sbjct 3647 TACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAAC 3706 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC-TGTACAAAATCGTTCTGCTAAATT 33049 |||||| || |||| || | | ||| | || | | |||| || ||||||| Sbjct 3707 GAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATT 3762 Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109 || | || ||||| ||||| | |||||||| ||||||| |||| ||||||| | Sbjct 3763 TTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCT 3822 Query 33110 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 33169 ||| | | || || |||| || ||| ||||||||||| ||| ||||| ||||| Sbjct 3823 TTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCAC 3882 Query 33170 TGTCCAAAATGATGCCTCTGC--CTTTTTATACATATTCCAGATGTCATGATATTGAATT 33227 |||| |||| | ||| ||||||||||| |||| || |||||||||| ||| Sbjct 3883 ACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATT 3942 Query 33228 GGAAAAATAACAAA 33241 |||||||| ||||| Sbjct 3943 GGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| || || | |||||| |||| | || ||||||||||||| ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| ||| || || || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 |||||||| | ||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 || || | |||||| ||||||||||| ||||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 |||||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| ||||| ||||| || ||| |||| |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 9959 GCATACCA 9952 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || ||||| || |||| || || |||||||| || || ||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 62312 CTATT 62316 ||||| Sbjct 12389 CTATT 12385 >seq43701 Length=19211 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 >seq12393 Length=14882 Score = 100 bits (110), Expect = 4e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 |||||||| ||||| ||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT- 62919 ||||| ||||| ||||| || ||| |||| ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 62920 CGCTT 62924 ||||| Sbjct 1014 CGCTT 1018 >seq1 Length=778493 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989 ||||||||||||||||||||| ||||| || |||||||||||||| || || ||||| || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 || || || || | || || |||| |||| |||| || |||||| || Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTC 566460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || || ||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATT 32449 || | ||| || ||||||||||| || || ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633203347952000