Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3179 212 7e-50 seq1 145 8e-30 seq51641 102 9e-17 >seq3179 Length=6207 Score = 212 bits (234), Expect = 7e-50 Identities = 598/901 (66%), Gaps = 22/901 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| ||| || ||||| |||||| || |||| || ||| | || |||||||| Sbjct 3073 CATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTC 3132 Query 92850 CAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | || ||| || || | || ||||| | ||| || ||| || | | | Sbjct 3133 GATTGAGATCATATCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAG-T 3191 Query 92908 CAACTCGTA-CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| | | ||| | |||||| || | ||||| || || || ||||||| | | Sbjct 3192 CAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGT 3251 Query 92967 TCATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 | ||||| | ||| | | |||| ||| || ||||| || ||||| || || || Sbjct 3252 TAATTCCAATCAAGTCCGTC-GGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACT 3310 Query 93026 GCTTCTTTCAAGATTTCT-ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTA 93084 ||||| | | |||| | | | | || || || || | || | | || | Sbjct 3311 GCTTCATCAATAATTTGACAATGTTTTTCT-TTACACGGCTTGTTAACAATTTTTTTCAA 3369 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||| || || ||||| ||| |||||||||||| || | || || | ||||| || Sbjct 3370 CATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAA 3429 Query 93145 TGTTAAACCTGGTAACAGTCCTCGT-TTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 || ||||| |||| | ||| | ||||| ||||||||||| | |||| ||| | Sbjct 3430 AGTCAAACCGTGTAAAATACCTTTTGTTCTT-AGCCAAAATATAGCGCCAAATGAACCCG 3488 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 |||||||||||||||| ||||| || || || |||||||| || | | | ||| Sbjct 3489 AAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCG---- 3544 Query 93264 TACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | | |||||| ||||||||||| ||| |||| | | || | |||||| Sbjct 3545 TCCGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTTTCA 3604 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGA 93382 || ||||| ||||| | | || | ||| || ||||| || || |||||||| Sbjct 3605 ATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGG 3664 Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 ||||||||| || || || || ||||| || |||| || ||||||| || ||||| Sbjct 3665 CTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCT 3724 Query 93443 TCCGTGATCTGCACTTCTTG-AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 |||| | ||| | || | |||||| |||| ||||| | || || ||||| Sbjct 3725 TCCGGTACCTGGATATCAAGCAGAAAAGAG-TCTAA---ATTTTTAGCAACAATTCCATC 3780 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 | |||||||| ||||||||||| |||||||| | ||| |||||| || || Sbjct 3781 ACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATT 3840 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 ||| ||| | |||||| || ||||| ||||| || ||| |||| | || | Sbjct 3841 TGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAAG 3900 Query 93622 TGC--TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 ||| |||||| ||||| |||||| || ||||||| |||||||| || ||||| ||| Sbjct 3901 TGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAAGCGA 3960 Query 93680 T 93680 | Sbjct 3961 T 3961 >seq1 Length=778493 Score = 145 bits (160), Expect = 8e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 |||||||||||| || ||||| || ||||| || || || | |||| |||||||| Sbjct 565231 ATTTTCATTGACAATCCCATCACTGGCAGCAAAGAATGCTAAAACATGCGAAATAAAATG 565172 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 ||||||| || || || | |||||| | | ||||||||||| || ||||| || Sbjct 565171 CCTCTCATCGTCCTTGAGGCTGGCCCAATGAGCCAAGTCTTTTGAAAGGTCCACTTCCTC 565112 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 ||||||| ||||| ||||||||||| |||||||| | ||| ||||| || || | || Sbjct 565111 AGCAGTCCAGAACGAAGCTTCTGCTTTCTTGTACATCTGCCAGATGTCGTGGTACTTTAT 565052 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||| || ||||||||| ||| || || Sbjct 565051 TGGAAAAATTACAAAACGACGAGGATTGTC 565022 >seq51641 Length=269637 Score = 102 bits (112), Expect = 9e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 ||| |||| ||| |||||||| |||||| || ||||| || || |||||||| || || Sbjct 49179 TTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGC 49120 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTTAAAGCCC 93287 ||||||||||| | ||| ||||| ||| || | || |||||| | || ||||| Sbjct 49119 AAATGCCACAAGTCTTTCACCAAAA-CTGCTCTCTTCCGACTGGATCCACTCTATAGCCC 49061 Query 93288 AATCGGCTTTTTTCTTAATACAAGG 93312 |||| |||||||| |||| |||||| Sbjct 49060 AATCAGCTTTTTTTTTAACACAAGG 49036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556484083668800