Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq46528 87.8 4e-12 seq18338 87.8 4e-12 seq43672 84.2 4e-11 seq2510 84.2 4e-11 >seq46528 Length=129674 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 12991 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 12932 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 12931 CCCCACGTTGGGC 12919 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 16155 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCATGGTCGTGGGTTCGAG 16096 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 16095 CCCCACGTTGGGC 16083 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 33888 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGTTCGAG 33829 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 33828 CCCCACGTTGGGC 33816 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 81995 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGTTCGAG 81936 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 81935 CCCCACGTTGGGC 81923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATC-TAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||| Sbjct 71209 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCTAG-GGTCGTGGGTTCGA 71151 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 71150 GCCCCACGTTGGGC 71137 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 1419 TAGCCCGGCTAGCTCAGTCGGTAGAGTATGGGACTCTTAATCTCAGGGTCGTGGGTTCGA 1360 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1359 GCCCCACGTTGGGC 1346 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 3502 TAGCCCGGCTAGCTCAGTCGGTAGAGTATGGGACTCTTAATCTCAGGGTCGTGGGTTCGA 3443 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 3442 GCCCCACGTTGGGC 3429 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 88765 TAGCCCGGCTAGCTCAGTCGGTAGAGTATGGGACTCTTAATCTCAGGGTCGTGGGTTCGA 88706 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 88705 GCCCCACGTTGGGC 88692 >seq18338 Length=82781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 54075 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 54134 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | ||||||| Sbjct 54135 CCCCACGTTGGGCAGA 54150 >seq43672 Length=649989 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 391380 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 391321 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 391320 GCCCCACGTTGGGC 391307 >seq2510 Length=103641 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 27328 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 27269 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 27268 GCCCCACGTTGGGC 27255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027124085114920