Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16889 89.7 4e-13 seq8576 89.7 4e-13 seq11827 82.4 6e-11 >seq16889 Length=2476 Score = 89.7 bits (98), Expect = 4e-13 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||| Sbjct 1208 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAAC 1150 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 1149 CATAACTGATTTAATGAGCCATTCG 1125 Score = 89.7 bits (98), Expect = 4e-13 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||| Sbjct 1208 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAAC 1150 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 1149 CATAACTGATTTAATGAGCCATTCG 1125 >seq8576 Length=1413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||| Sbjct 640 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAAC 582 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 581 CATAACTGATTTAATGAGCCATTCG 557 Score = 89.7 bits (98), Expect = 4e-13 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||| Sbjct 640 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAAC 582 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 581 CATAACTGATTTAATGAGCCATTCG 557 >seq11827 Length=4993 Score = 82.4 bits (90), Expect = 6e-11 Identities = 70/81 (86%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 115535 TATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACCAAA 115591 |||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||||| | Sbjct 4993 TATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAACCATA 4935 Query 115592 ACTGATATATTGAGCCATTCG 115612 |||||| || ||||||||||| Sbjct 4934 ACTGATTTAATGAGCCATTCG 4914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 70/81 (86%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 114338 TATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAACCAAA 114394 |||| ||||||||||| |||| ||||||||||||| | |||| |||| ||||||||| | Sbjct 4993 TATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAGGG-GTAACGATCAAAGGAACCATA 4935 Query 114395 ACTGATATATTGAGCCATTCG 114415 |||||| || ||||||||||| Sbjct 4934 ACTGATTTAATGAGCCATTCG 4914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396800502604240