Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq51498 96.9 3e-15 seq12393 86.0 6e-12 >seq51498 Length=41259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| ||| |||| ||||| || || || |||||||| || ||||| || || ||| Sbjct 9961 ATTATTGAAGCACAGACTGAAACTGGTACACCATACATGCTGTATAAAGATGCTTGTAAC 10020 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||||| |||| || || || |||||||||||||| ||||||||||| | || ||| Sbjct 10021 AGGAAATCCAACCATCAGAATTTAGGAACAATAAAATGCAGTAATCTTTGTACTGAGATT 10080 Query 123708 ATCGAATACAG 123718 | |||| ||| Sbjct 10081 GTGGAATTCAG 10091 >seq12393 Length=14882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 ||| || ||| |||| ||||| || || || |||||||| || ||||| || || || Sbjct 1013 TATCATTGAAGCACAGACAGAAACTGGTACACCATACATGCTGTATAAAGATGCTTGTAA 954 Query 123647 CAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| ||| |||| || || || |||||||||||||| ||||| ||||| | || || Sbjct 953 CAGAAAATCCAACCATCAGAATTTAGGAACAATAAAATGCAGTAACCTTTGTACTGAGAT 894 Query 123707 TATCGAATACAG 123718 | | |||| ||| Sbjct 893 TGTGGAATTCAG 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451697419835200