Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3179 129 6e-25 >seq3179 Length=6207 Score = 129 bits (142), Expect = 6e-25 Identities = 238/347 (69%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 || |||||||| || ||||| |||||||| || || || ||||| ||||| ||||| || Sbjct 3365 TTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTT 3424 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 |||||||| ||| | | | || | || | ||||||||||| ||| | || Sbjct 3425 GAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAA 3484 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 |||||||| || | || || |||||||||||||| || | ||||| ||| | ||||| Sbjct 3485 CCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCG 3544 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 || | |||||| | |||||| |||||||| | ||| ||| | ||| Sbjct 3545 TC---CGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTT 3601 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGAT---G 133179 || || ||||| || | || |||| || | ||| | ||| || || || Sbjct 3602 TCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAAC 3661 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| | ||||||||||||||| ||||| ||||| || ||||||| Sbjct 3662 AGGCT---ATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAA 3705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499834433100800