Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3179 242 4e-59 seq1 138 1e-27 seq51641 111 2e-19 seq51498 96.9 4e-15 >seq3179 Length=6207 Score = 242 bits (268), Expect = 4e-59 Identities = 607/908 (67%), Gaps = 28/908 (3%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || ||| ||| |||||||| |||||||| |||| || ||| |||||||||| || Sbjct 3073 CATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTC 3132 Query 18717 TAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 | ||| || ||| ||||| |||| || ||||| | || ||||| || | | | Sbjct 3133 GATTGAGAT-CATATCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAGT 3191 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | ||| | | |||||||| || | |||| ||||||| ||||| | | Sbjct 3192 CAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGT 3251 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 | ||||| || || | |||| || ||||| | ||| |||| ||| || |||| Sbjct 3252 TAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTG 3311 Query 18896 CCTCTGATATAATAGATACAAC-TCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 | || ||||| |||| | | |||| | || || | || | ||| ||| Sbjct 3312 CTTCATCAATAATTTG-ACAATGTTTTTCTTTACACGGCTTGTTAACAATTTTTTTCAAC 3370 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 ||||||||||||||||| ||||||| || || || ||| || | |||||| ||||| Sbjct 3371 ATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAA 3430 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 || ||||| | | | ||| || || ||| ||| ||||||| ||||||| || ||| Sbjct 3431 GTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAA 3490 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 || ||||||||||| || || || ||||| || | | || || || | || || Sbjct 3491 AAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTCCG-- 3548 Query 19135 TTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 | || ||||| || | ||||| ||||| | | ||| || | ||| || || Sbjct 3549 --ACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTTTCAAT 3606 Query 19194 AGAATTAAATAGAT-ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | || ||||| || | ||| | ||| || || | || || || | | Sbjct 3607 TGCGTTGAATAGTCGACGTTTT-TCAATGGGATCACGAATGTACGTTTCAATTAACAGGC 3665 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 | |||||||| || || | ||||| || || | ||||| ||| ||| || | |||| Sbjct 3666 TATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTT 3725 Query 19313 CTGTTATCTGTACTTCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 | | || ||| | ||| | |||| | | ||||||| | ||| ||||||||| Sbjct 3726 CCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATTTTTAGCAACAATTCCATCA 3781 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA-----TCTGAGGTTA 19426 |||| ||||||||||| |||| |||| ||||||||| ||||| | |||| || Sbjct 3782 CTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATT- 3840 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 || |||| || | | ||||||||||| ||| ||||| || || |||| | || Sbjct 3841 -TG---TCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGA 3896 Query 19487 CCTCTGC--TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| ||||||||||||| ||||||||||| |||||| ||| ||||| || ||||| Sbjct 3897 CAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 Query 19545 TCTATTTT 19552 | || || Sbjct 3957 GCGATGTT 3964 >seq1 Length=778493 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||||||| || || |||||||||||||| || ||||||| Sbjct 567013 CCTCATCCCTGCTGATAAGTTCATTAGAGAAGGTCAAACCAGGCATCAGACCCCTTTTTT 566954 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| || |||||||| || ||||| || || || ||||| || || || || | Sbjct 566953 TCAACCAGAAAATTGAAGCAAACGAGCCAGAGAAAAAGATCCCTTCAACAGCAGCGAATG 566894 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||| ||||| | |||| | | || ||||| |||| |||||| | | Sbjct 566893 CCACAACCCGTTCACCATAGGTGGCATTGTCAGCATTGATCCAGTTCAATGCCCACTGTG 566834 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 ||||| |||| || ||| | || || |||| ||| || | ||| Sbjct 566833 CCTTCCTTTTCACTGGTGGTAAAGTTTCAATAGCATTGAACAAATA 566788 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || || |||||||| || ||||| |||||||| ||||| |||| Sbjct 565236 ACCAAATTTTCATTGACAATCCCATCACTGGCAGCAAAGAATGCTAAAACATGCGAAATA 565177 Query 19405 AAATGTTTTTCATCTGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 ||||| | ||||| | || | | | ||||| | | ||||| || | || || Sbjct 565176 AAATGCCTCTCATC-GTCCTTGAGGCTGGCCCAATGAGCCAAGTCTTTTGAAAGGTCCAC 565118 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 ||| ||| | ||||| || ||||| |||||||| || ||||| | ||| || || | || Sbjct 565117 TTCCTCAGCAGTCCAGAACGAAGCTTCTGCTTTCTTGTACATCTGCCAGATGTCGTGGTA 565058 Query 19524 TTGTATAGGAAATATAACAAA 19544 | ||| ||||| || ||||| Sbjct 565057 CTTTATTGGAAAAATTACAAA 565037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| ||| ||||| | ||||||||| ||||||||||| |||||||| || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACC 19347 || |||||||| | |||||||| | |||| ||| || ||||| || ||| Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTCAACC 566456 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||||| || |||||||| |||| | ||||||||| || || || ||||| || Sbjct 568328 CATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCTTC 568269 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAt 18764 | ||| || |||||| || ||||| ||||||| | ||| || || Sbjct 568268 AAGTGAAATGTTTTCCATGAAGTCAAAGGGATTTTCTTTATTGTAAAT 568221 >seq51641 Length=269637 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 |||||||| ||||||||||| || ||||| | ||| |||||||| || ||||| ||||| Sbjct 49181 CTTTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCA 49122 Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCC 19155 ||||| || || |||||||| ||| |||| || | || ||||| | | ||| Sbjct 49121 GCAAATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCC 49062 Query 19156 CAATCAGCCTTCTTTTTTACACATGGCATTG 19186 |||||||| || ||||| ||||| |||| || Sbjct 49061 CAATCAGCTTTTTTTTTAACACAAGGCACTG 49031 >seq51498 Length=41259 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 |||||||| | || | |||| || | |||||||||||||| ||||||||||||| | Sbjct 9117 TCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGTC 9058 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 ||||| | | | | || | |||| || | ||| || ||||| ||||| ||||| Sbjct 9057 CAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGC-ATAAAA 8999 Query 48246 AA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA-AGTTCAAGAAAGTCCA 48303 || ||| || | |||| ||||||| || || | || | ||| | ||||||| || | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAA-TCAA 8940 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 || || |||||||||||||| || || || || Sbjct 8939 AGATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||| || |||| || ||||||||||| |||||||| | | ||||| || || |||| Sbjct 2030 CACTGAAGGTTTTCTTAGTTTCTTTATGTAGATTAGAGACTGCAATTCTTGCGGCCAATA 1971 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 |||||| || ||||| ||| || ||| || || ||||||| |||||| ||||| Sbjct 1970 CAGCATAGTCAGGATG-TTTGGTGGTCATACTAGCAGCAGTTTCTGCAGCTAATGTATCT 1912 Query 49035 AATTCTTTAGTAGTTACACCTGTATA 49060 ||||| ||||||||||| | ||| Sbjct 1911 AATTCCACTGTAGTTACACCAGGATA 1886 Score = 86.0 bits (94), Expect = 7e-12 Identities = 126/181 (70%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 47562 TTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTA 47621 ||||| | || ||| | |||| | ||| ||| | ||||||||| |||| ||| |||| Sbjct 12029 TTATAAGATTCATATGCTCCGTCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 11970 Query 47622 TAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAG 47679 |||||||| ||||||||||||| | | || | | ||||||| || | ||||||| Sbjct 11969 TAATATATAGTTTCAAATATTTGTTTATTCAATAACATTGCTTC--ATCACTGTCAAAAG 11912 Query 47680 GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTAT 47739 || | |||| ||| || | || ||||||||||||||||| || | || Sbjct 11911 GAAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGAT 11852 Query 47740 G 47740 | Sbjct 11851 G 11851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561728533396800