Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3179 235 6e-57 seq1 109 7e-19 seq51641 82.4 9e-11 >seq3179 Length=6207 Score = 235 bits (260), Expect = 6e-57 Identities = 596/897 (66%), Gaps = 22/897 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||| ||| |||||||| ||||||| ||||||||||||| | || |||||||| Sbjct 3073 CATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTC 3132 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | ||| || | ||||| |||| || ||||| | || ||||| || || Sbjct 3133 GATTGAGATCATATCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAGTC 3192 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 | |||| || || ||||| |||| ||||| || |||| |||| |||| ||| Sbjct 3193 AAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTT 3252 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 || ||||| | | || | || ||| | ||| |||||| || || || Sbjct 3253 AATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGC 3312 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAA 37168 || | || || || ||||| || ||| | || | || | | | ||| || Sbjct 3313 TTCATCAATAAT-TTGACAATG--TTTTTCTTTACACGGCTTGTTAACAATTTTTTTCAA 3369 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 || |||||||||||||| ||||||||||||||||| ||| || | |||||| ||||| Sbjct 3370 CATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAA 3429 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 || || || | | | |||| || || | | ||||||||| || |||| || || || Sbjct 3430 AGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGA 3489 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || ||||||||||| || || || ||||||| ||| |||| | || | | Sbjct 3490 AAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGG---CGTC 3546 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC--AATTGTTTCA 37406 || ||||| ||| | ||| |||||| | | ||| || || ||||||| Sbjct 3547 CGACGAGATCCAATTTAAAGCCCATGTGGCCTTT--TGTCCGACAGTCGGAAATGTTTCA 3604 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 ||||| || || || |||||| ||| || || || ||||||| | Sbjct 3605 ATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGG 3664 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||||||||| ||||| | ||||| || ||| | ||||| || ||| | ||||| Sbjct 3665 CTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCT 3724 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | || || | ||| | ||| | |||| |||| | ||| || |||||| Sbjct 3725 TCCGGTACCTGGATATCAAGCAGAAAAGAGT---CTAAATTTTTAGCAACAATTCCATCA 3781 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--TTTGATAATT 37644 |||| ||||| || || | | || | |||||||| |||||| | ||||| | | Sbjct 3782 CTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGA--T 3839 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704 || |||| || | | |||||| |||| ||||||||| || || |||| | | | Sbjct 3840 TTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAA 3899 Query 37705 ATGC--ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||| ||||||||| |||| ||||||| || || ||||||||| |||||||| Sbjct 3900 GTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 >seq1 Length=778493 Score = 109 bits (120), Expect = 7e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| || |||||||||||||| ||| |||| ||||| |||||||||||||| Sbjct 568328 CATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCTTC 568269 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| || |||||||| || ||||| ||||| Sbjct 568268 AAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 >seq51641 Length=269637 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 36884 TTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 ||| ||||| || || |||| |||| || || || || ||||||||||| || ||||| | Sbjct 56653 TTTCTGATACTCCCCGACTC-TCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGCGATATGT 56595 Query 36943 TTTCCATAAAATCAAATGGATT 36964 |||||||||||||||||||||| Sbjct 56594 TTTCCATAAAATCAAATGGATT 56573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591916097684800