Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq40525 504 2e-138 seq7768 221 3e-53 seq41186 105 2e-18 seq32722 84.2 6e-12 >seq40525 Length=778 Score = 504 bits (558), Expect = 2e-138 Identities = 586/781 (75%), Gaps = 29/781 (4%) Strand=Plus/Plus Query 6998 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAA 7057 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAA 60 Query 7058 AAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGC 7117 |||||| |||| ||||||||||| ||||| || |||||||||||||||||||| |||||| Sbjct 61 AAGCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGC 120 Query 7118 GGCACCATTCAGGAACTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAAT 7177 ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| || Sbjct 121 GGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGAT 180 Query 7178 GCCGGGTCAGTTGACGGTGAAAACGGCGTGCAGAATGCT---------TCCGACAGCANN 7228 ||| | || |||||||||||||||| | | |||||||| ||||||||| Sbjct 181 GCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCACCGACAGCACC 240 Query 7229 NNNNNNNNNNNNNNNNATGTTGCTAACGTGG-CAAAAGTAAAAACGGAATCGGCCACAAC 7287 |||| | | | || |||||||||||| ||| ||| |||||| Sbjct 241 GACAGCACCGACAGCGATGTAGATGGCACGGAAAAAAGTAAAAACCGAAGCGGTCACAAC 300 Query 7288 GGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATATTGACGCTCTGCATGCCAC 7347 || ||||| |||||||||||||||||||| ||| |||| || |||| || || ||||| Sbjct 301 GGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTTCACGCCAC 360 Query 7348 GCGTAACGAGCCGGTATCTATCGTAGAGCCTGGTGTGATTATCCGCGTATCTGAACAGGA 7407 |||||||||| | || ||||| || ||||||||||| |||||||||| |||| || Sbjct 361 GCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCGTTATCCGCGTGACTGACGTAGA 420 Query 7408 TGCCGACGACTTGATCGCAAAGGG-GCTGG---CTTTCGAAGTCTG--AAGGGGGCCACA 7461 || ||||| |||| | ||| ||||| | ||| |||| | ||||||| | Sbjct 421 GGCTAACGACCTGATATCTCGGGGCGCTGGGCCCCGGGGAAATCTGACAGGGGGGCCTAA 480 Query 7462 TGGCTGA-TTTCGATAATC-TCTTTGACGAGGCCAT-GTCGCGAGCTGATA-GCGCTATC 7517 ||||||| |||||| |||| | ||||| || | || | |||| || |||| | |||| Sbjct 481 TGGCTGATTTTCGACAATCTTTTTTGATGAATCGATGGGCGCGCGCGGATACCCACTATA 540 Query 7518 CGT-GGTGTGATGGGCACAG-AGGCAAAGGTGATGTCAGGCGCTTTGTCAGGTGCCAC-- 7573 ||| || |||||||| ||| |||||| | | | ||| | |||| || || | ||| Sbjct 541 CGTGGGATTGATGGGCGCAGAAGGCAAGGATAACCTCATGATCTTTATCCGGCGTCACGC 600 Query 7574 -CCTGGTCGGTGTATTCGATGATCCAGAAAATATCGGATATGCCGGTGCCGGGATTCGTG 7632 || || || || || || |||||||| || || || || ||| | ||||| || Sbjct 601 TCCCGG--GGGGTCTTTGACGATCCAGAGAACATTGGTTACACCGAAGTGGGGATCCGAA 658 Query 7633 TTGAAGGAACCAGCCCGACCCTGTTTGTGGAAACCGCCACTGTCAGGCAGCTGCAGCGTA 7692 |||| |||||||| ||||| |||||||| | || | ||| | |||| | | Sbjct 659 TTGATGGAACCAGGCCGACGTTGTTTGTGAACACATCGGATGTTACCGGGCTGGAAAGGC 718 Query 7693 TGGACACGCTGACGATTAACGGTCGGCAATTCTGGGTTGAACGTATTGGTCCGGATGACT 7752 |||| ||||||| | ||||||| || |||| |||||||| || ||||||| ||||| | Sbjct 719 TGGATACGCTGAAGGTTAACGG-CGTGAATTTTGGGTTGATCGCGTTGGTCC-GATGATT 776 Query 7753 G 7753 | Sbjct 777 G 777 >seq7768 Length=548 Score = 221 bits (244), Expect = 3e-53 Identities = 197/243 (81%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 6962 GACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGC 7021 |||||||||||| || ||||| ||| ||||||||| |||||||| ||||||||||||| | Sbjct 304 GACCCTGACGCAGTCATCTCCTTCATACTGGCATAGCTTCCCCCTGTGGCCCTGTCGGTC 363 Query 7022 CACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAA 7081 ||||||||||||| ||| ||||||| | | ||||| ||||| || | ||| ||||||| Sbjct 364 CACCTTTCTGGAG-ATTACCCATGAGACACAAAGATTAGCTGATCTCTCGCATGAATGAC 422 Query 7082 CTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTGACGATG 7141 | ||| || | ||||| | | ||| || |||| || ||| ||||| ||||| |||||| Sbjct 423 CGTGGCACTCGGCTTATCAACAAGGACATCACCAACGTCACGATTCAAGAACTTACGATG 482 Query 7142 CGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTTGAC-GGTGAAAA 7200 ||||| || ||||| |||||||| |||||||| ||||| | || ||||| |||||||| Sbjct 483 CGTATAGCCGAGCTGGAAGAGGACCTGGATGG-GATGCCAGTTCGATTGACGGGTGAAAA 541 Query 7201 CGG 7203 ||| Sbjct 542 CGG 544 >seq41186 Length=295252 Score = 105 bits (116), Expect = 2e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 7031 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACC 7090 ||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||| || Sbjct 92030 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGATCGCTC-CCTGAATGACCTTGGCACT 91972 Query 7091 CAGCTTAACCGCGAG 7105 ||||||||||||||| Sbjct 91971 CAGCTTAACCGCGAG 91957 >seq32722 Length=1301577 Score = 84.2 bits (92), Expect = 6e-12 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 7319 ACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGAGCCT 7378 ||| |||| || |||| || || ||||||||||||||| | || || || || |||||| Sbjct 311561 ACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCGAGCCT 311620 Query 7379 GGTGTGATTATCCGCGTATCTGAACAGGATGCCGACGACTTGATCGCAAAGGGGCTGGCT 7438 ||||| |||||||||| |||| || || ||||| |||| | || |||||| Sbjct 311621 GGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGACCTGATATCTCGGGCGCTGGCC 311680 Query 7439 TTCGAAGTCTGA-AGGGGGCC 7458 ||| ||||| |||||||| Sbjct 311681 CGGGAAATCTGACAGGGGGCC 311701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141787218299280