Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq40525 506 6e-139 seq7768 215 1e-51 seq41186 105 2e-18 seq32722 80.6 8e-11 >seq40525 Length=778 Score = 506 bits (560), Expect = 6e-139 Identities = 585/781 (75%), Gaps = 20/781 (3%) Strand=Plus/Plus Query 6998 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAA 7057 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAA 60 Query 7058 AAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGC 7117 |||||| |||| ||||||||||| ||||| || |||||||||||||||||||| ||||| Sbjct 61 AAGCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGC 120 Query 7118 GGCACCATTCAGGAACTAACGATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGAC 7177 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 121 GGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGAT 180 Query 7178 GCCATCTCGGTTGACGGTAAAAACGGCGTGCAGAATGCTTCCGACAGCANNNNNNNNNNN 7237 |||| ||| |||||||| ||||||| | | |||||||| ||||||||| Sbjct 181 GCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCACCGACAGCACC 240 Query 7238 NNNNNNNNNNNNNNNNNTGTTGCTAACGTGG-CAAAAGTAAAAACGGAATCGGCCACAAC 7296 ||| | | | || |||||||||||| ||| ||| |||||| Sbjct 241 GACAGCACCGACAGCGATGTAGATGGCACGGAAAAAAGTAAAAACCGAAGCGGTCACAAC 300 Query 7297 GGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATATTGACGCTCTGCATGCCAC 7356 || ||||| |||||||||||||||||||| ||| |||| || |||| || || ||||| Sbjct 301 GGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTTCACGCCAC 360 Query 7357 GCGTAACGAACCGGTATCCATCGTAGAGCCTGGTGTGATTATCCGCGTATCTGAACAGGA 7416 ||||||||| | || || || || ||||||||||| |||||||||| |||| || Sbjct 361 GCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCGTTATCCGCGTGACTGACGTAGA 420 Query 7417 TGCCGACGACTTGATCGCAAAGGG-GCTGG---CTTTCGAAGTCTG--AAGGGGGCCACA 7470 || ||||| |||| | ||| ||||| | ||| |||| | ||||||| | Sbjct 421 GGCTAACGACCTGATATCTCGGGGCGCTGGGCCCCGGGGAAATCTGACAGGGGGGCCTAA 480 Query 7471 TGGCTGA-TTTCGATAATC-TCTTTGACGAGGCCAT-GTCGCGAGCTGATA-GAGCTATC 7526 ||||||| |||||| |||| | ||||| || | || | |||| || |||| |||| Sbjct 481 TGGCTGATTTTCGACAATCTTTTTTGATGAATCGATGGGCGCGCGCGGATACCCACTATA 540 Query 7527 CGT-GGTGTGATGGGCACAG-AGGCAAAGGTGATGTCAGGCGCTTTGTCAGGTGCCAC-- 7582 ||| || |||||||| ||| |||||| | | | ||| | |||| || || | ||| Sbjct 541 CGTGGGATTGATGGGCGCAGAAGGCAAGGATAACCTCATGATCTTTATCCGGCGTCACGC 600 Query 7583 -CCTGGTCGGTGTATTCGATGATCCAGAAAATATCGGATATGCCGGTGCCGGGATTCGTG 7641 || || || || || || |||||||| || || || || ||| | ||||| || Sbjct 601 TCCCGG--GGGGTCTTTGACGATCCAGAGAACATTGGTTACACCGAAGTGGGGATCCGAA 658 Query 7642 TTGAAGGAACCAGCCCGACCCTGTTTGTGGAAACCGCCACTGTCAGGCAGCTGCAGCGTA 7701 |||| |||||||| ||||| |||||||| | || | ||| | |||| | | Sbjct 659 TTGATGGAACCAGGCCGACGTTGTTTGTGAACACATCGGATGTTACCGGGCTGGAAAGGC 718 Query 7702 TGGACACGCTGACGATTAACGGTCGGCAATTCTGGGTTGATCGTGTTGGTCCTGATGATT 7761 |||| ||||||| | ||||||| || |||| ||||||||||| |||||||| ||||||| Sbjct 719 TGGATACGCTGAAGGTTAACGG-CGTGAATTTTGGGTTGATCGCGTTGGTCC-GATGATT 776 Query 7762 G 7762 | Sbjct 777 G 777 >seq7768 Length=548 Score = 215 bits (238), Expect = 1e-51 Identities = 196/243 (81%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 6962 GACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGC 7021 |||||||||||| || ||||| ||| ||||||||| |||||||| ||||||||||||| | Sbjct 304 GACCCTGACGCAGTCATCTCCTTCATACTGGCATAGCTTCCCCCTGTGGCCCTGTCGGTC 363 Query 7022 CACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAA 7081 ||||||||||||| ||| ||||||| | | ||||| ||||| || | ||| ||||||| Sbjct 364 CACCTTTCTGGAG-ATTACCCATGAGACACAAAGATTAGCTGATCTCTCGCATGAATGAC 422 Query 7082 CTTGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTAACGATG 7141 | ||| || | ||||| | | ||| || ||| || ||| ||||| ||||| |||||| Sbjct 423 CGTGGCACTCGGCTTATCAACAAGGACATCACCAACGTCACGATTCAAGAACTTACGATG 482 Query 7142 CGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCATCTCGGTTGAC-GGTAAAAA 7200 ||||| || ||||| |||||||| |||||||| || |||| ||| ||||| ||| |||| Sbjct 483 CGTATAGCCGAGCTGGAAGAGGACCTGGATGG-GATGCCAGTTCGATTGACGGGTGAAAA 541 Query 7201 CGG 7203 ||| Sbjct 542 CGG 544 >seq41186 Length=295252 Score = 105 bits (116), Expect = 2e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 7031 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACC 7090 ||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||| || Sbjct 92030 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGATCGCTC-CCTGAATGACCTTGGCACT 91972 Query 7091 CAGCTTAACCGCGAG 7105 ||||||||||||||| Sbjct 91971 CAGCTTAACCGCGAG 91957 >seq32722 Length=1301577 Score = 80.6 bits (88), Expect = 8e-11 Identities = 103/141 (73%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 7328 ACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGAGCCT 7387 ||| |||| || |||| || || |||||||||||||| | || || || || |||||| Sbjct 311561 ACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCGAGCCT 311620 Query 7388 GGTGTGATTATCCGCGTATCTGAACAGGATGCCGACGACTTGATCGCAAAGGGGCTGGCT 7447 ||||| |||||||||| |||| || || ||||| |||| | || |||||| Sbjct 311621 GGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGACCTGATATCTCGGGCGCTGGCC 311680 Query 7448 TTCGAAGTCTGA-AGGGGGCC 7467 ||| ||||| |||||||| Sbjct 311681 CGGGAAATCTGACAGGGGGCC 311701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144956380248320