Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq51498 93.3 5e-14 seq51641 91.5 2e-13 seq43701 84.2 3e-11 seq12393 84.2 3e-11 >seq51498 Length=41259 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || ||| | || ||||||| || ||||| |||||||| ||||| || || ||| Sbjct 9952 TGGTATGCAATTATTGAAGCACAGACTGAAACTGGTACACCATACATGCTGTATAAAGAT 10011 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 |||||||||| ||| ||||| ||||||| |||||||| || || |||||||| Sbjct 10012 GCTTGTAACAGGAAATCCAACCATCAGAATTTAGGAACAATAAAATGCAGTAATCTTTGT 10071 Query 75998 ACGGAAATT 76006 || || ||| Sbjct 10072 ACTGAGATT 10080 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 76196 AATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTT 76254 ||||||||||| | || |||||| | |||||||| ||||| || |||| |||||| || Sbjct 11842 AATATGCGACATCGTCCCATTGGTATTGGTGTTCAGGGTCTTGCTGATGCATTTATATTA 11901 Query 76255 GTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAAC 76314 || | | | | ||||| |||||||| | | ||||| | || |||||||| Sbjct 11902 ATGAGGTTTC-CTTTTGACAGTGATGAAGCAATGTTATTGAATAAACAAATATTTGAAAC 11960 Query 76315 CATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAA 76357 || ||| ||| || || | || |||||||||||||||||| Sbjct 11961 TATATATTACGGTGCCTTGAAAGCCAGTTGTGAATTGGCTGAA 12003 >seq51641 Length=269637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||||||||| |||||||||||||| || || || ||||||||||||||||||| Sbjct 56571 AGAATCCATTTGATTTTATGGAAAACATATCGCTGGAAGGAAAGACCAACTTCTTTGAGA 56630 Query 65501 AGCGAGTTGGGGACTATGGGAAA 65523 || |||| ||||| ||| |||| Sbjct 56631 AGAGAGTCGGGGAGTATCAGAAA 56653 >seq43701 Length=19211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 76196 AATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTT 76254 ||||||||||| | || |||||| | |||||||| ||||| || |||| |||||| || Sbjct 13457 AATATGCGACATCGTCCCATTGGTATTGGTGTTCAGGGTCTTGCTGATGCATTTATATTA 13398 Query 76255 GTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAAC 76314 || | | | | ||||| |||||||| | | ||||| | || |||||||| Sbjct 13397 ATGAGGTTTC-CCTTTGACAGTGATGAAGCAATGTTATTGAATAAACAAATTTTTGAAAC 13339 Query 76315 CATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAA 76357 || ||| ||| || || | || |||||||||||||||||| Sbjct 13338 TATATATTACGGTGCCTTGAAAGCCAGTTGTGAATTGGCTGAA 13296 >seq12393 Length=14882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 |||||| ||| | || ||||||| || ||||| |||||||| ||||| || || ||| Sbjct 1021 TGGAAGCGTATCATTGAAGCACAGACAGAAACTGGTACACCATACATGCTGTATAAAGAT 962 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 |||||||||| || ||||| ||||||| |||||||| || || || ||||| Sbjct 961 GCTTGTAACAGAAAATCCAACCATCAGAATTTAGGAACAATAAAATGCAGTAACCTTTGT 902 Query 75998 ACGGAAATT 76006 || || ||| Sbjct 901 ACTGAGATT 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596166020665600