Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq40525 1182 0.0 seq7768 286 1e-72 seq32722 262 1e-65 seq41186 123 7e-24 >seq40525 Length=778 Score = 1182 bits (1310), Expect = 0.0 Identities = 735/780 (94%), Gaps = 15/780 (2%) Strand=Plus/Plus Query 7187 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAA 7246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAA 60 Query 7247 AAGCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGC 7306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGC 120 Query 7307 GGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGAT 7366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGAT 180 Query 7367 GCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCANNNNNNNNNNN 7426 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCACCGACAGCACC 240 Query 7427 NNNNNNNNNNNNNNNGATGTAGATGGCACGGAAAA-AGTAAAAACCGAAGCGGTCACAAC 7485 |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 GACAGCACCGACAGCGATGTAGATGGCACGGAAAAAAGTAAAAACCGAAGCGGTCACAAC 300 Query 7486 GGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTTCACGCCAC 7545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTTCACGCCAC 360 Query 7546 GCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCGTTATCCGCGTGACTGACGTAGA 7605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCGTTATCCGCGTGACTGACGTAGA 420 Query 7606 GGCTAACGACCTGATATCTC-GGGCGCTGG---CCCGGGAAATCTGACA-GGGGGCCTAA 7660 |||||||||||||||||||| ||||||||| || ||||||||||||| |||||||||| Sbjct 421 GGCTAACGACCTGATATCTCGGGGCGCTGGGCCCCGGGGAAATCTGACAGGGGGGCCTAA 480 Query 7661 TGGCTGA-TTTCGACAATC-TTTTTGATGAATCGAT-GGCGCGCGCGGATA-CCACTATA 7716 ||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct 481 TGGCTGATTTTCGACAATCTTTTTTGATGAATCGATGGGCGCGCGCGGATACCCACTATA 540 Query 7717 CGT-GGATTGATGGGCGCAG-AGGCAAGGATAACCTCAGGATCTTTATCCGGCGTCACGC 7774 ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 541 CGTGGGATTGATGGGCGCAGAAGGCAAGGATAACCTCATGATCTTTATCCGGCGTCACGC 600 Query 7775 T-CCGGGGGGTCTTTGACGATCCAGAGAACATTGGTTACGCCGAAGTGGGGATCCGAATT 7833 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 601 TCCCGGGGGGTCTTTGACGATCCAGAGAACATTGGTTACACCGAAGTGGGGATCCGAATT 660 Query 7834 GATGGAACCAGGCCGACGTTGTTTGTGAACACATCGGATGTTAGCGGGCTGGAAAGGCTG 7893 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 661 GATGGAACCAGGCCGACGTTGTTTGTGAACACATCGGATGTTACCGGGCTGGAAAGGCTG 720 Query 7894 GATACGCTGAAGGTTAACGGGCGTGAATTTTGGGTTGATCGCGTTGGTCCGGATGATTGC 7953 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 GATACGCTGAAGGTTAAC-GGCGTGAATTTTGGGTTGATCGCGTTGGTCC-GATGATTGC 778 >seq7768 Length=548 Score = 286 bits (316), Expect = 1e-72 Identities = 212/244 (87%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 7151 GACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGC 7210 |||||||||||| || ||||| ||| ||||||||| |||||||| ||||||||||||| | Sbjct 304 GACCCTGACGCAGTCATCTCCTTCATACTGGCATAGCTTCCCCCTGTGGCCCTGTCGGTC 363 Query 7211 CACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAGCTGATCGCTCGCCTGAATGAC 7270 ||||||||||||| ||| ||||||| | | ||||| |||||||| ||||| |||||||| Sbjct 364 CACCTTTCTGGAG-ATTACCCATGAGACACAAAGATTAGCTGATCTCTCGCATGAATGAC 422 Query 7271 CTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGATG 7330 | |||||||| ||||| | | ||| || ||||| || ||||||||| |||||||||||| Sbjct 423 CGTGGCACTCGGCTTATCAACAAGGACATCACCAACGTCACGATTCAAGAACTTACGATG 482 Query 7331 CGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATTGAC-GGTGAAAA 7389 ||||| || |||||||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct 483 CGTATAGCCGAGCTGGAAGAGGACCTGGATGG-GATGCCAGTTCGATTGACGGGTGAAAA 541 Query 7390 CGGA 7393 |||| Sbjct 542 CGGA 545 >seq32722 Length=1301577 Score = 262 bits (290), Expect = 1e-65 Identities = 147/148 (99%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 7512 TGGTGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCG 7571 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 311556 TGGTGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCG 311615 Query 7572 AGCCTGGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGACCTGATATCTCGGGCGC 7631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311616 AGCCTGGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGACCTGATATCTCGGGCGC 311675 Query 7632 TGGCCCGGGAAATCTGACAGGGGGCCTA 7659 |||||||||||||||||||||||||||| Sbjct 311676 TGGCCCGGGAAATCTGACAGGGGGCCTA 311703 >seq41186 Length=295252 Score = 123 bits (136), Expect = 7e-24 Identities = 73/75 (97%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 7220 GGAGTATTTCCCATGACAGAGAAAGAAAAGCTGATCGCTCGCCTGAATGACCTTGGCACT 7279 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 92030 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGATCGCTC-CCTGAATGACCTTGGCACT 91972 Query 7280 CAGCTTAACCGCGAG 7294 ||||||||||||||| Sbjct 91971 CAGCTTAACCGCGAG 91957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147463567905280