Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3179 116 5e-21 >seq3179 Length=6207 Score = 116 bits (128), Expect = 5e-21 Identities = 341/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| |||||||| |||||||||||||| || || || | ||| || ||| || Sbjct 3374 AAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTC 3433 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || ||| | | |||||| || || ||||||||||||| | | || || ||||| Sbjct 3434 AAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAA 3493 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 |||||||| |||||| |||||| |||| | | ||| | | || | | Sbjct 3494 AATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTCC--GACG 3551 Query 18335 AGTATCCATTTTTGTGCCCAT-TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || ||||| ||| |||||| | |||| | | ||| | | || || || Sbjct 3552 AG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG-ACAGTCGGAAATGTTTCAATTGC 3609 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 || || | | |||||| ||| ||| || || || || ||||||| ||| Sbjct 3610 GTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTATA 3669 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAA--ACTATAAAACGATCTAGCCTCG 18511 |||||| || || | | ||||||| ||| | ||||| | || |||| || |||| || Sbjct 3670 CATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAA--ATATAGCTTCC 3727 Query 18512 GGATATTGAATCTC--GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 || || || || || | |||| | | ||||| | | ||| || || ||| Sbjct 3728 GGTACCTGGATATCAAGC-AGAAAAGAGT----CTAAATTTTTAGCAACAATTCCATCAC 3782 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGT 18629 || || ||||||||||| | || | ||| ||||| ||||| |||| |||||||| Sbjct 3783 TAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATTTG 3842 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCC 18667 |||| || | |||||| |||||||||||||| ||| Sbjct 3843 TCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCC 3880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731376888592000