Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14329 116 7e-21 seq3179 98.7 2e-15 seq24757 89.7 1e-12 >seq14329 Length=486688 Score = 116 bits (128), Expect = 7e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | |||||||||||| || | ||||| |||||| |||||||| Sbjct 199979 ACCACCACGAAGACGAAGTACTAAATGTAAGGTTGATTCTTTCTGGATATTGTAATCAGA 199920 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || ||| |||| || | ||||||||| |||||||| || ||||| || || ||||| Sbjct 199919 TAACGTACGTCCATCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCGGGTGG 199860 Query 192429 TATTCCT 192435 |||||| Sbjct 199859 AATTCCT 199853 >seq3179 Length=6207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 379/598 (63%), Gaps = 24/598 (4%) Strand=Plus/Plus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || |||||||||||||| ||||||||| || |||||||| |||| |||||| |||| Sbjct 3371 ATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAA 3430 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 || || || | | | ||| | || | ||||||||||| | |||| || ||| Sbjct 3431 GTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAA 3490 Query 49938 AAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TAT 49995 || |||||||| || || ||| || |||| || | |||| || || | | Sbjct 3491 AAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC--GCTC---ACCGTAGGTGGCGT 3545 Query 49996 CATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 50055 | | |||||||||| |||||| || |||| | || || || | |||| | Sbjct 3546 CCGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTTTCAA 3605 Query 50056 TAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG 50115 | || || |||| | | ||||||| ||||| | Sbjct 3606 TTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGC 3665 Query 50116 AATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTT 50175 ||||||||| || || || |||||| ||| ||||||| || || || | | |||| Sbjct 3666 TATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTT 3725 Query 50176 CTGAATACTGAACTT----CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 | | ||| | | | ||||||| | ||||||| | || ||||| ||| Sbjct 3726 CCGGTACCTGGATATCAAGCAGAAAAGAGT-------CTAAATTTTTAGCAACAATTCCA 3778 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||| | || || ||||| || | | | ||||||||| ||||| ||||||| | | Sbjct 3779 TCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGA 3838 Query 50292 TTTTCCCA--AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 ||| ||| ||| | ||| || |||| ||| ||||| || | |||| |||| Sbjct 3839 TTTGTCCAGTCGAT--GAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGA 3896 Query 50350 CTACGGATTTTTTATACATTTGAT--ATATATCAAAATGTTCAATGGGAAATAGTACA 50405 | | | |||||| || | |||| |||||||| || || || ||||| | |||| Sbjct 3897 CAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACA 3954 >seq24757 Length=373871 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| || | ||| || |||| || || ||||||||||||||||||||||| Sbjct 54707 GATATTGTAATCTGACAGTGTGCGACCATCTTCTAACTGTTTACCAGCAAAGATTAATCT 54648 Query 192414 CTGTTGATCAGGTGGTATTCCT 192435 |||||||||||| || || ||| Sbjct 54647 CTGTTGATCAGGGGGGATACCT 54626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983797349262000