Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3179 105 1e-17 seq14329 95.1 2e-14 >seq3179 Length=6207 Score = 105 bits (116), Expect = 1e-17 Identities = 294/442 (67%), Gaps = 7/442 (2%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||| || |||||| |||| || |||||||||| | ||||||||||| | ||| || | Sbjct 3085 TTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATTGAGATCAT 3144 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATA 38949 || ||| |||| || ||||| | | || || ||| || | |||| | | | Sbjct 3145 ATCCATGAAATGGAACGGATTGTGACTGTTGTA-TATCTTATCGCAGTCAAGTTCCAGCA 3203 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | | ||||||||| | ||||||| |||||| |||| | || || || || | | Sbjct 3204 ACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAATTCCAATCA 3263 Query 39010 ATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | | ||||| || || |||| ||| |||||||| || || |||| | ||| Sbjct 3264 AGTCCGTCGGTAAAGCTTCTGTCAA-AAACTCTTTTTCAATCCGGACTGCTTCATCAATA 3322 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 || | | || || || ||| | | | || | || || || | | |||||| Sbjct 3323 ATT-TGACAATGTTTTTCTTT-ACACGGCTTGTTAACAATTTTTTTCA-ACATCAAACAT 3379 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| |||||||||||| |||||||| |||| |||||| |||||| || || Sbjct 3380 GCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCG 3439 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | | | ||| | || | ||||||||||| | |||| || ||||| |||||| Sbjct 3440 TGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAAAATATA 3499 Query 39249 CCCTCCACACACGCAAATGCTA 39270 || || || ||| || |||| Sbjct 3500 CCTTCAACGGCCGCGAAAGCTA 3521 >seq14329 Length=486688 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | |||||||||||| || | ||||| ||||| ||||| || Sbjct 199979 ACCACCACGAAGACGAAGTACTAAATGTAAGGTTGATTCTTTCTGGATATTGTAATCAGA 199920 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | ||| | || || | ||||||||| ||||| || || ||||| ||||| ||||| Sbjct 199919 TAACGTACGTCCATCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCGGGTGG 199860 Query 171962 TATTCCT 171968 |||||| Sbjct 199859 AATTCCT 199853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904523675496000