Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 seq12393 95.1 4e-14 seq51498 93.3 1e-13 seq45688 91.5 4e-13 >seq1 Length=778493 Score = 105 bits (116), Expect = 2e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAA-AAAACAGCAAGA 133134 ||||| || || ||||| ||| || |||| || ||||||||||| || ||| ||| ||| Sbjct 565037 TTTGTAATTTTTCCAATAAAGTACCACGACATCTGGCAGATGTACAAGAAAGCAG-AAGC 565095 Query 133135 TTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCT 133194 || || |||||| | ||||| || | || |||||| || || |||| ||| Sbjct 565096 TTCGTTCTGGACTGCTGAGGAAGTGGACCTTTCAAAAGACTTGGCTCATTGGGCCAGCCT 565155 Query 133195 TACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATG 133253 | | ||||| | ||||||||||| ||| ||||||| || |||||||| ||||||| Sbjct 565156 CAAGGACGATGAGAGGCATTTTATTTCGCATG-TTTTAGCATTCTTTGCTGCCAGTGATG 565214 Query 133254 GTATTGTTCTTGAAAATTT 133272 | ||||| ||||||||| Sbjct 565215 GGATTGTCAATGAAAATTT 565233 >seq12393 Length=14882 Score = 95.1 bits (104), Expect = 4e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||| |||| ||||||||| || |||||| | || || || |||||||||| ||| Sbjct 882 CTGAATTCCACAATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGG 941 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 || ||||| |||||||||||||| || || || |||||||| || || || || ||||| Sbjct 942 TTGGATTTTCTGTTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGT 1001 Query 155748 GCGTC 155752 || || Sbjct 1002 GCTTC 1006 >seq51498 Length=41259 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||| |||| ||||||||| || || ||| | || || || |||||||||| ||| Sbjct 10091 CTGAATTCCACAATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGG 10032 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 || ||||| |||||||||||||| || || || |||||||| || || || || ||||| Sbjct 10031 TTGGATTTCCTGTTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGT 9972 Query 155748 GCGTCCAGAAT 155758 || || | ||| Sbjct 9971 GCTTCAATAAT 9961 >seq45688 Length=120515 Score = 91.5 bits (100), Expect = 4e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || ||||||||| ||| || ||||| || ||||||| || ||| | ||| | || Sbjct 103588 GGCAATCAGACCACACAGATTGCATACATGAACTCTGTAAGGGTCGGATACCTCAAACAG 103529 Query 251463 CCGACCCTTGGT-GAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || | || | ||| ||| ||||| ||||| ||| ||||| || |||||||||| Sbjct 103528 ACG-CTCTCGCAAGAACTGAGCAGCACCATGTGATATCTGGCAATCCCGTTCCATTTCAC 103470 Query 251522 CGAAACGAAGACCACCATC 251540 | ||||||||||||||||| Sbjct 103469 CAAAACGAAGACCACCATC 103451 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||||||||||||||| ||||||||||| || || ||| | | || || Sbjct 102457 ATAGTCATACGACTGGGAATAGCATGAGGATTGATGATAATATCTGGTGTGATACCTTCC 102398 Query 251905 GCAGTGAAGGGCATATCCT 251923 || || || |||||||||| Sbjct 102397 GCTGTAAACGGCATATCCT 102379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470797023278440