Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq15880 107 4e-18 seq24757 87.8 4e-12 >seq15880 Length=18522 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| || |||||||||||| | || || ||||||||| |||||| || || Sbjct 8766 GATAGCTGCAGCGTTGTGGTGGTACTATTTTTCCAAGGGTATAGAACTCTTAGACACAGT 8707 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||| || ||| | ||||| ||| || ||||||| | || |||||||| |||| Sbjct 8706 ATTTTTTATTCTTCGCAAAAAAAATAACCAACTTAGTTTCCTTCATGTATATCACCATTC 8647 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 || ||||||| || | ||| | || | |||||| |||| || |||||| Sbjct 8646 AACAATGTTTATATTGTGGTGGATTGGAGTCAAATGGGTTGCTGGTGGTCAA 8595 >seq24757 Length=373871 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| || Sbjct 52707 TATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTTTCAATAGTATCTGATGGTTCAAC 52648 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | ||||| ||||| || |||| || || || || |||||||| || Sbjct 52647 CTCTAGGGTTATTGTCTTCCCAGTCAGTGTTTTAACGAAGATCTGCATGAT 52597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981146388746680