Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq32177 86.0 8e-12 seq30734 86.0 8e-12 seq28095 86.0 8e-12 seq43691 84.2 3e-11 seq17196 84.2 3e-11 seq3985 84.2 3e-11 seq2504 84.2 3e-11 >seq32177 Length=5607 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| |||| Sbjct 1652 TCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAATTC 1593 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 1592 CCCGTCGAGGAG 1581 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| |||| Sbjct 1652 TCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAATTC 1593 Query 11789 CCCGACGAGGAGG 11801 |||| |||||||| Sbjct 1592 CCCGTCGAGGAGG 1580 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 ||||||| |||||| | |||||||||||| ||| | |||| ||| |||| | ||||||| Sbjct 1581 CTCCTCGACGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 1640 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 1641 TACTATCGAGGATTT 1655 >seq30734 Length=376196 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| Sbjct 132627 CTCATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTC 132686 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||| || |||| Sbjct 132687 AATTCCCCGTCGGGGAG 132703 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 127661 ATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 127602 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 127601 TCCCCGTCGGGGAG 127588 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 169794 ATTCCTCGATAGTATAGTGGTAAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 169853 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 169854 TCCCCGTCGGGGAG 169867 >seq28095 Length=6177 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| ||| ||||| | ||| |||||||||||| |||| Sbjct 2366 TCCTCGATAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGTAGACCGGGGTTCAATTC 2425 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2426 CCCGTCGGGGAG 2437 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||| ||| | |||| ||| |||| ||||||||| Sbjct 2437 CTCCCCGACGGGGAATTGAACCCCGGTCTACCGCGTGACAGGCGGAGATACTAACCACTA 2378 Query 139413 TACTAACGAGGATTT 139427 ||||| ||||||||| Sbjct 2377 TACTATCGAGGATTT 2363 >seq43691 Length=93141 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 1216 ATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 1157 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 1156 TCCCCGTCGGGGAG 1143 >seq17196 Length=3333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 2471 ATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 2412 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 2411 TCCCCGTCGGGGAG 2398 >seq3985 Length=443478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 197681 ATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 197622 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 197621 TCCCCGTCGGGGAG 197608 >seq2504 Length=88321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| ||| ||||| | ||| |||||||||||| || Sbjct 626 ATTCCTCGATAGTATAGTGGTGAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCAAT 685 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 686 TCCCCGTCGGGGAG 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652403150492800