Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq51498 131 4e-25 seq12393 87.8 4e-12 >seq51498 Length=41259 Score = 131 bits (144), Expect = 4e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || | ||||| |||||| |||| || ||||| ||||| || | ||| Sbjct 8903 TTTGCCATTTACTTGGAACCATGGCATGCAGACATCTTTGATTTCTTGGATGCTAAGAAA 8962 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 || |||| ||||||||||||||| | ||| | |||||||| |||||||| | ||| Sbjct 8963 AACACAGGAAAGGAAGAACAAAGAGCAAGAGATCTTTTTTATGCTCTGTGGATTCCTGAT 9022 Query 110877 TTATTCATGAAACGTGTTCA-AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | ||||||||||||||| | | || || ||| | | |||||||| || | Sbjct 9023 CTGTTCATGAAACGTGTTGAGACCAACCAAGAT-TGGACATTGATGTGTCCAAATGAATG 9081 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 ||||||||| |||||| | |||||||| ||||||||||| || ||||| || Sbjct 9082 TCCTGGTCTTCATGATGTCTGGGGAAAAGAATTTGAAGACCTCTATGAAAAGTA 9135 >seq12393 Length=14882 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAA-CTTCGTAAAAATCAAGGATTTGA 110830 ||||| |||||| | ||||| | ||| | || || || | || ||||| ||| || Sbjct 2946 GAACCGTGGCATGCGGATATCTGTGATTATTTGGATGCTAAGAAACAATCA-GGAAAGGA 2888 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 |||| |||||| | | | ||| ||||| |||||||| | ||| ||||||||||||| Sbjct 2887 AGAATTAAGAGCTCATAACTTAGACTATGCTCTGTGGATTCCTGATCTATTCATGAAACG 2828 Query 110891 TGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 |||| || || || | ||| | | |||||||| || | ||||||||| | Sbjct 2827 TGTTGAAACCAA--CCAAGATTGGACATTGATGTGTCCGAATGAATGTCCTGGTCTTGAT 2770 Query 110949 GATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGA 110998 || || | || ||||| ||||||||||| || || || ||| |||| Sbjct 2769 GAAGTCTGGGGGAAAGAATTTGAAGACCTCTATCTGAAGTAAGAATAAGA 2720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185989849169320