Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3179 242 5e-59 seq51498 150 2e-31 seq43701 123 3e-23 seq51641 116 5e-21 seq12393 100 4e-16 seq1 93.3 6e-14 >seq3179 Length=6207 Score = 242 bits (268), Expect = 5e-59 Identities = 608/916 (66%), Gaps = 21/916 (2%) Strand=Plus/Plus Query 39292 AAAATGATTATCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTC 39351 |||||||| || || ||||||| || ||| ||| || ||||||||||| | | | || Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 39352 GAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGC 39411 ||||||| ||||||| ||||| | ||| || | |||||||||| |||||||| || | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATT-GTGAC 3170 Query 39412 A-TTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGT 39470 || ||| | || | | | | ||| | || |||||| |||| ||||| || | Sbjct 3171 TGTTGTATATCTTATCGCAGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATAT 3230 Query 39471 ATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAA 39530 || ||||| || || ||||| || | | |||| ||| || || | || Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAA 3290 Query 39531 ACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT----CGATGTTACTACCTCATCACTC 39586 |||||||||| || || || || || || | ||||| | | | || | Sbjct 3291 ACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTT----CTTTACAC 3346 Query 39587 GG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCAT 39644 || || |||| | ||| ||||| || || || || || ||||||| || |||| Sbjct 3347 GGCTTGTTAACAATT--TTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCAT 3404 Query 39645 CTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCC 39704 | ||| ||| | ||| || ||||| || | || | | | ||| || | |||| Sbjct 3405 CCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCC 3464 Query 39705 AAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAA 39764 ||||||| || |||| || || ||||| || || ||||| || || || || || |||| Sbjct 3465 AAAATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAA 3524 Query 39765 GTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCT 39824 | ||| ||||| | | || ||||| || ||||| || || | Sbjct 3525 TACGCTCACCGTAGGTGGCGTCCGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTC 3584 Query 39825 TTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAA 39884 ||| || | |||||| || || || || || | |||||||| ||| || Sbjct 3585 CGACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAA 3644 Query 39885 CATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAA 39944 || || || |||||||| ||||||||||| || || | |||||| ||||| | |||| Sbjct 3645 TGTACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAA 3704 Query 39945 ATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAA 40003 | ||| ||| || | ||||| | | || | || | | |||| | | ||| Sbjct 3705 ACGAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAA 3760 Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||| | || ||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 3761 TTTTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGC 3820 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 ||||| | | | || ||||||| ||| |||||| |||| ||| ||||| || Sbjct 3821 CTTTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCC 3880 Query 40124 GCTGTCCAAAACGACGCCTCTGC--CTTTTTGTACATGTTCCATATATCACGATATTGTA 40181 | |||| | || | ||| ||||| |||||| ||||||||||| |||||| || Sbjct 3881 ACACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTA 3940 Query 40182 TTGGAAAAATAACAAA 40197 |||||||||| ||||| Sbjct 3941 TTGGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 150 bits (166), Expect = 2e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| | |||||| ||||||| | |||||||||||||||||||||||||||| Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | | || ||| |||||||| || ||||| |||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||||| | ||| | |||||| |||||||| ||||| ||| ||| | || || | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 69696 AATATCAGAATGCCATGGTTC 69716 || || | |||||||||||| Sbjct 8938 GATGTCTGCATGCCATGGTTC 8918 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||| | |||| |||||||| || ||||| ||| |||| || || |||||||| | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||||||||| ||||| |||||||||||||| ||||| | | |||| ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||| | | | | ||||||| |||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || | | || ||||| | ||||| || || || ||| Sbjct 12506 TGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 12447 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||| || || |||||||| || |||||||||||||| | ||||||||| Sbjct 12446 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 12387 Query 68839 TTTCTAAGACCATGTGT 68855 || | | ||||||||| Sbjct 12386 TTACGTAAACCATGTGT 12370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 ||||| | |||||| | ||| || ||||||| | ||||||||| || | || |||||| Sbjct 12029 TTATAAGATTCATATGCTCCGTCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 11970 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATT-GAGATCTTGTGCTTCTAGACTATCGAATGG 69071 ||||| || ||||| || || | ||||| | | | | |||||| ||| || || || Sbjct 11969 TAATATATAGTTTCAAATATTTGTTTATTCAATAACAT-TGCTTCATCACTGTCAAAAGG 11911 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 | | | | ||||||||||| || | |||||||| |||||||| || || | ||| Sbjct 11910 AAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATG 11851 Query 69132 TCTCTTATT 69140 || | |||| Sbjct 11850 TCGCATATT 11842 >seq43701 Length=19211 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||| | |||| |||||||| || ||||| ||| |||| || || |||||||| | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||||||||| ||||| |||||||||||||| ||||| | | |||| ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||| | | | | ||||||| |||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| || || | | || ||||| | ||||| || || || ||| Sbjct 7279 TGAAATTCTTTTGATAAAACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 7338 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || ||||| || || |||||||| || |||||||||||||| | ||||||||| Sbjct 7339 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 7398 Query 68839 TTTCTAAGACCATGTGT 68855 || | | ||||||||| Sbjct 7399 TTACGTAAACCATGTGT 7415 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 ||||| | |||||| ||| || ||||||| | ||||||||| || | || |||||| Sbjct 13270 TTATAAGATTCATATACTCCATCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 13329 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATT-GAGATCTTGTGCTTCTAGACTATCGAATGG 69071 ||||| || ||||| ||||| | ||||| | | | | |||||| ||| || || || Sbjct 13330 TAATATATAGTTTCAAAAATTTGTTTATTCAATAACAT-TGCTTCATCACTGTCAAAGGG 13388 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 | | | | ||||||||||| || | |||||||| |||||||| || || | ||| Sbjct 13389 AAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATG 13448 Query 69132 TCTCTTATT 69140 || | |||| Sbjct 13449 TCGCATATT 13457 >seq51641 Length=269637 Score = 116 bits (128), Expect = 5e-21 Identities = 117/149 (79%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 39695 TTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCA 39754 ||||||| ||| ||||| | ||||||| ||| ||||||||||| ||||| ||||| ||| Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 39755 AATGCAACAAGTCTCTCTCCGTAACTTGTATCAT---TATGTATCCACTTCTGT-GCCCA 39810 ||||| |||||||| || || |||| | || | || |||||| ||| | ||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCAC-TCTATAGCCCA 49060 Query 39811 ATCAGCTTTCTTCTTTACACAAGGCATTG 39839 ||||||||| || || |||||||||| || Sbjct 49059 ATCAGCTTTTTTTTTAACACAAGGCACTG 49031 >seq12393 Length=14882 Score = 100 bits (110), Expect = 4e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| | ||||| || ||||| | |||||||||||||| ||||||||||||| Sbjct 2746 TTCAAATTCTTTCCCCCAGACTTCATCAAGACCAGGACATTCATTCGGACACATCAATGT 2805 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | | | ||| |||||||| |||||||| |||||||| ||||| ||| Sbjct 2806 CCAATCTTGGTTGGTTTCAACACGTTTCATGAATAGATCAGGAATCCACAGAGC-ATAGT 2864 Query 69636 GAGATCTCTG-GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | || | ||| |||||| ||||||| | ||| ||| ||| | | | || Sbjct 2865 CTAAGTTATGAGCTCTTAATTCTTCCTTTCCTGATTGTTTCTTAGCATCCAAATAATCAC 2924 Query 69695 TAATATCAGAATGCCATGGTTCTA 69718 ||||| | |||||| ||||||| Sbjct 2925 AGATATCCGCATGCCACGGTTCTA 2948 >seq1 Length=778493 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| || || ||||| ||||| ||||| || ||||| || || || || Sbjct 568331 TGACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCC 568272 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| | ||| || ||||||||||| ||||| ||||| Sbjct 568271 TTCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686444106196800