Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3179 192 5e-44 seq1 116 3e-21 seq51154 86.0 5e-12 >seq3179 Length=6207 Score = 192 bits (212), Expect = 5e-44 Identities = 605/928 (65%), Gaps = 32/928 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAA--GCACAGG 43757 ||||| | |||||||| |||||||||| |||||| ||||| |||||| |||| | Sbjct 3956 TTTGTAATTTTTCCAATAAAATATCATGATATATGGATCATGTATAAAAAAAAGCACTTG 3897 Query 43758 CGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT 43817 |||| |||| | || ||||||||| | ||||||| || ||| | | || | Sbjct 3896 TCTCATCGTGGAGTGTGGAGGAAGTTGATCTATCTAAAGATTT----CATCG-ACTGGAC 3842 Query 43818 TAAAACCACAA-------GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCG 43870 ||| | ||| |||| |||||||| || | ||||| |||||||| | Sbjct 3841 --AAATCTCAAAGATAGTGAAAGGCATTTTATTTCACATATATTGGCATTTTTTGCCACT 3784 Query 43871 AGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930 || || || || || | ||||||| | | || ||| || || | || |||| Sbjct 3783 AGTGATGGAATTGTTGCTAAAAATTTAG--ACTCT-TTTCTGCTTGATATCCAGGTACCG 3727 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| || ||| || |||||||| || || ||||| | || ||||||||||| Sbjct 3726 GAAGCTATATTTTTCTACTCGTTTCAAAAAGCGATGGAAAACGTGCACTCGGAAATGTAT 3667 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 || || | || || |||||||| ||| || || | |||| | || || || Sbjct 3666 AGCCTGTTAATTGAAACGTACATTCGTGATCCCATTGAAAAACGTCGACTATTCAACGCA 3607 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 || |||||| | || | | ||| || || ||||| | || ||||| || Sbjct 3606 ATTGAAACATTTCCGACTGTCGGACAAAAGGCCACATGGGCTTTAAATTGGATCTCGTCG 3547 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | | | || || || |||| || || || | || ||||| || || ||||| Sbjct 3546 GACGCCACCTACGGTGAGCGTATTGTAGCTTTCGCGGCCGTTGAAGGTATATTTTTTTCG 3487 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || |||| || ||||||||| ||| | | |||| | | | || ||||| ||| Sbjct 3486 GGTTCATTTGGCGCTATATTTTGGCTAAGAACAAAAGGTATTTTACACGGTTTGACTTTT 3427 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTT 44290 |||||||| | || | | |||||||| ||||||||||||||||| || ||| | | Sbjct 3426 TCAAATGAACTTATTTCTAGGGATGAAGGTTTACATTGCGATTTTGCATGTTTGATGTTG 3367 Query 44291 GGATATCTAGGAGACGATAAGCCTTC--ATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 | | | | || ||||| | | | || ||| | || || | ||| || | Sbjct 3366 AAAAAAATTGTTAAC---AAGCCGTGTAAAGAAAAACATTGTCAAAT--TATTGATGAAG 3312 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 |||| ||| ||| |||| ||| ||||| ||| ||||| | || || ||||| | Sbjct 3311 CAGTCCGGATTGAAAAAGAGTTTTTGACAGAAGCTTTACCGACGGACTTGATTGGAATTA 3252 Query 44409 ATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGG 44468 | | | ||||| ||||||||||||| |||||| ||| | | | ||||||| | Sbjct 3251 ACGCAAAACTGATGTCGCAATATATTGAATTCATTGCCGATAGACTGTTGCTGGAACTTG 3192 Query 44469 GTTGCGATAA---ACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGT 44525 |||||||| | || | | | || || ||||| |||| ||||| | || || Sbjct 3191 ACTGCGATAAGATATACAACAGT---CACAATCCGTTCCATTTCATGGATATGATCTCAA 3135 Query 44526 TGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCA 44585 | ||||| ||||| | ||||| |||| | | ||||| ||||||||| | ||| || | Sbjct 3134 TCGAAGGAAAAACTATTTTTTTCGAAAGAAGAGTTGGTGAATATCAGAAAGCGGGTGTGA 3075 Query 44586 TGATAACAAGTGACAATAAATTTACTAC 44613 || | | |||| || | ||||| || Sbjct 3074 TGTCACCGGATGACCATCATTTTACAAC 3047 >seq1 Length=778493 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 ||||| || ||||| | | ||||| | |||||||| | || || ||||| |||| Sbjct 565014 TGCTTCGTGACAATCCTCGTCGTTTTGTAATTTTTCCAATAAAGTACCACGACATCTGGC 565073 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | |||||||| |||||| | || || || ||||| || || ||||| || | | |||| Sbjct 565074 AGATGTACAAGAAAGCAGAAGCTTCGTTCTGGACTGCTGAGGAAGTGGACCTTTCAAAAG 565133 Query 43797 ACTTAGCACATTGGATT-GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 |||| || |||||| || | || | | || | |||||||| || ||||| Sbjct 565134 ACTTGGCTCATTGGGCCAGCCTCAAGGACG-ATGAGAGGCATTTTATTTCGCATGTTTTA 565192 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || |||||||| || || ||||| ||||||||||||||||| ||| Sbjct 565193 GCATTCTTTGCTGCCAGTGATGGGATTGTCAATGAAAATTTGGTGAGT 565240 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||| | ||| | ||||||| || |||||||||||||| ||||| || |||||||| Sbjct 566472 CAAGAAATACAAGTTACAGAAGCGCGTTGTTTTTATGGGTTCCAAATAGCAATAGAAAAC 566531 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 |||||||| || |||||||||||| |||| ||||| || ||| Sbjct 566532 ATTCATTCAGAGATGTACAGTCTTTTGATTGATACATATATC 566573 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||| || |||||||| ||||| | ||||| || |||||||||||||||| Sbjct 568234 AAAATCCCTTTGACTTCATGGAAAACATTTCACTTGAAGGAAAGACAAACTTTTTTGAAA 568293 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||||||||||||||| ||||| || ||| Sbjct 568294 AACGTGTTGGAGAATATCAGAAGATGGGAGTAATG 568328 >seq51154 Length=75708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| | || ||||||||||| ||||||| | |||| |||||||| |||| | Sbjct 45975 AGGTGACTTGGGGCCTGTTTATGGCTTTCAGTGGAGACACTTTGGAGCGCAATACAAAGA 46034 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| | ||||||| ||||| |||| || ||||||||| | ||||||||| || || Sbjct 46035 CATGCATAGTGATTATTCCAATCAAGGTATAGATCAATTAGCGAACGTTATAGAAACCAT 46094 Query 40985 TAAATCCGATCC 40996 ||| | |||| Sbjct 46095 CAAAACAAATCC 46106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397193842990600