Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq54120 141 2e-28 seq29267 87.8 4e-12 >seq54120 Length=17037 Score = 141 bits (156), Expect = 2e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || ||||| | || || ||||| |||||||||||||| ||| | |||||||| Sbjct 14745 TTTATAATGTTATAGTAACTGCACATGCATTTGTTATGATTTTTTTTATGGTTATGCCTA 14686 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||||||||| || || ||||||||||| ||||| | ||| | || ||||| ||||||| Sbjct 14685 TTATGATAGGGGGGTTTGGAAATTGATTGATTCCTCTTATGTTGGGAGCTCCAGATATGG 14626 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTG 7706 | |||||| || | |||||||| |||||||| Sbjct 14625 CATTTCCACGGTTAAACAATATGAGTTTTTG 14595 >seq29267 Length=189138 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| |||||||| || || || || || || || ||||| || || Sbjct 14495 CCATCTTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGTGGAATGCCCTCT 14554 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||| |||||||| |||||| ||| ||||||||||| | ||| || || Sbjct 14555 TTGTCCTGGATCTTAGCTTTCACATTTTCAATGGTGTCTGATGGTTCGACCTC 14607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191704283959280