Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3179 260 1e-64 seq1 104 2e-17 >seq3179 Length=6207 Score = 260 bits (288), Expect = 1e-64 Identities = 594/887 (67%), Gaps = 10/887 (1%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| ||| || ||||| |||| ||||||| ||| ||||||| ||||| | Sbjct 3077 ACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATT 3136 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGC-GTTGTAATGTTTTTCACACTTTAG 4366 || || | ||||| |||| |||||||| || | |||||| || || || | || Sbjct 3137 GAGATCATATCCATGAAATGGAACGGATT-GTGACTGTTGTATATCTTATCGCAGTCAAG 3195 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | || || || || | ||||| ||||| || ||| |||| |||||| Sbjct 3196 TTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAAT 3255 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||| || | |||| || | |||||||||||||| ||| || || ||||| Sbjct 3256 TCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGCTTC 3315 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 || || | ||| |||||| | || || || || | | | |||| || Sbjct 3316 ATCAATAATTTGACAATGTTTTTCTTTACACGGCTTGTTAACAATTTTTTTCAACATCAA 3375 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| |||||||| ||||| |||||||| || || ||| ||||| || ||||| || || Sbjct 3376 ACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTCAA 3435 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| | | | |||| | || | ||||||||||||||| ||||||| || ||||| || Sbjct 3436 ACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAAAA 3495 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||| ||||| ||||| || || ||||| | || ||| || |||| | Sbjct 3496 TATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCG---TAGGTGGCGTCCGACGA 3552 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| ||||| ||||| | || |||| || ||||| ||| | || ||||| Sbjct 3553 GATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTTTCAATTGCGTT 3612 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 |||| | || |||||||| || || |||| || || || |||| ||||||||||| Sbjct 3613 GAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTATACAT 3672 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 ||| || || | ||||| || || | ||||| ||| || || ||||||| | ||| Sbjct 3673 TTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTTCCGGTAC 3732 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || | || ||| |||| || |||| | || || || ||||| | || Sbjct 3733 CTGGATATCAAGCAGAAAAGAGTCTA--AATTTTTAG-CAACAATTCCATCACTAGTGGC 3789 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 |||||| ||||| | ||| || ||||| | | ||| | || || ||| |||||| Sbjct 3790 AAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATTTGTCCAGTC 3849 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA--AAACGACGCTTCCGCTTTT 5084 | |||||||||| || ||||||||| || ||| |||| | ||| | | |||| Sbjct 3850 GATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAAGTGCTTTTTT 3909 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| ||| |||||| |||| | || |||| || ||||| Sbjct 3910 TTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 >seq1 Length=778493 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| ||||| ||||| ||||||| || ||| |||||||| | | Sbjct 567611 TCTGTCCGCAACAAACTCTATGTACTGTTTCATGAGATCTTTGTTCATTCCAATCAGTGA 567552 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 ||| ||||| || | || | ||| |||||||| || | ||||| ||| |||| || || Sbjct 567551 CACCGGTAGGGCATCAGTTAGAAATTCTTGTTCAATCTTAACGGCATCTCTGATAATTTC 567492 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 ||||| | | | |||||||||||| | || | |||| ||||| ||||| || Sbjct 567491 AATTATTCTCTGCTGTGATGGTTTATTTGTAAGGTGACTGAACATCAAACAGGCAAAGTC 567432 Query 4559 ACAATGCAAACC 4570 ||||| ||||| Sbjct 567431 GCAATGTAAACC 567420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426767923421960