Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3179 289 4e-73 seq51498 147 3e-30 seq43701 129 8e-25 seq51641 96.9 5e-15 >seq3179 Length=6207 Score = 289 bits (320), Expect = 4e-73 Identities = 624/919 (68%), Gaps = 27/919 (3%) Strand=Plus/Plus Query 47816 AAAATGATTATCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTC 47875 |||||||| || || | ||||| || ||| ||| ||||||||||| || | | | || Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 47876 GAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTA--ACT 47933 ||||||| ||||||| ||||| | ||| || | ||||| |||| || ||||| ||| Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 47934 GCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATA 47993 | || || || || | | | | ||| | ||||||||| |||| |||||| ||| Sbjct 3172 G--TTGTATATCTTATCGCAGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATA 3229 Query 47994 TATCTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGTAGAGCCTCCGTAAG 48052 ||| ||||| || || ||||| || |||| | |||| ||| || || | Sbjct 3230 TATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTC-GGTAAAGCTTCTGTCAA 3288 Query 48053 AAACTCTTGTTCGATAGTGACAGCATCCACTATTAT----CGATGTTACCGTTTCCTCAC 48108 |||||||| ||| || ||| || || | || || | ||||| |||| | || Sbjct 3289 AAACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTT----TTTCTTTAC 3344 Query 48109 TTGG-TGGATACAACAAATGTTTA-AACATTAAACATGCAAAATCACAATGAAGACCTTC 48166 || | | || |||| | ||| ||||| |||||||||||||| ||||| | |||||| Sbjct 3345 ACGGCTTGTTA--ACAATTTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTC 3402 Query 48167 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAG 48226 ||| ||| ||| | ||| || ||||| || | |||| | | | || | || | || Sbjct 3403 ATCCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAG 3462 Query 48227 CCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGT 48286 ||||||||| || | || || || ||||| ||||| ||||| |||||||| || || Sbjct 3463 CCAAAATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTAC 3522 Query 48287 AAGTCTCTCTCCGTAACTGGC-TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCT 48345 || | ||| ||||| |||| | || | | ||||| | ||||| ||||| | Sbjct 3523 AATACGCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTT 3581 Query 48346 TCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTT 48405 ||| || | |||||| || || || || || ||||||| || ||| Sbjct 3582 GTCCGACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCAC 3641 Query 48406 TAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCT 48465 || ||| || || ||||| || ||||||||||| ||||| | ||||| || || | | Sbjct 3642 GAATGTACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTT 3701 Query 48466 GAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCC 48524 |||| ||| ||| || | ||||| | | ||| | || | | |||| || | Sbjct 3702 GAAACGAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CT 3757 Query 48525 AAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAA 48584 ||||| | | || ||||||||||||| ||||||||||| |||| |||| ||||||| Sbjct 3758 AAATTTTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAA 3817 Query 48585 TATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 48644 | |||| | | || || ||||||| ||| |||||| |||| ||| ||||| Sbjct 3818 TGCCTTTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCC 3877 Query 48645 TCAGCTGTCCAAAATGATGCCTCTGC--TTTTTTATACATATTCCATATATCACTGTATT 48702 || | |||| |||| | ||| |||||||||||| ||||||||||| |||| Sbjct 3878 TCCACACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATT 3937 Query 48703 GGATTGGGAAAATAACAAA 48721 ||||| ||||| ||||| Sbjct 3938 TTATTGGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 147 bits (162), Expect = 3e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| | |||||| ||||||| | ||||| ||||||||||| |||||||||| Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || | || ||| |||||||| || |||||||| ||||| |||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 ||||||| | ||| |||||||| |||||||| || || ||| ||| | || || | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 78104 AATATCAGAATGCCATGGTTC 78124 || || | |||||||||||| Sbjct 8938 GATGTCTGCATGCCATGGTTC 8918 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||| | |||| ||||| || |||||||| ||| | || || || |||||||| | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||||||||| ||||| ||||||||||| || ||||| | | ||| ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | |||| || | | || ||||||| |||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || | | || ||||| | ||||| || || || ||| Sbjct 12506 TGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 12447 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| |||| || || ||||| ||||| |||||||||||||| | ||||||||| Sbjct 12446 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 12387 Query 77247 TTTCTGAGACCATGTGT 77263 || | | ||||||||| Sbjct 12386 TTACGTAAACCATGTGT 12370 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 ||||| | |||||| | ||| ||| |||||| | ||||||||| |||| ||| || ||| Sbjct 12029 TTATAAGATTCATATGCTCCGTCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 11970 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCAATACTATCAAACGG 77479 ||||| || ||||| || || | ||||| | | | | ||||||| ||| ||||| || Sbjct 11969 TAATATATAGTTTCAAATATTTGTTTATTCAATAACAT-TGCTTCATCACTGTCAAAAGG 11911 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | | | | ||||| ||||| || | |||||||| ||||||||||| || | ||| Sbjct 11910 AAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATG 11851 Query 77540 TCTCTTATTG 77549 || | ||||| Sbjct 11850 TCGCATATTG 11841 >seq43701 Length=19211 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||| | |||| ||||| || |||||||| ||| | || || || |||||||| | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||||||||| ||||| ||||||||||| || ||||| | | ||| ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | |||| || | | || ||||||| |||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 ||||| | |||||| ||| ||| |||||| | ||||||||| |||| ||| || ||| Sbjct 13270 TTATAAGATTCATATACTCCATCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 13329 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCAATACTATCAAACGG 77479 ||||| || ||||| ||||| | ||||| | | | | ||||||| ||| ||||| || Sbjct 13330 TAATATATAGTTTCAAAAATTTGTTTATTCAATAACAT-TGCTTCATCACTGTCAAAGGG 13388 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | | | | ||||| ||||| || | |||||||| ||||||||||| || | ||| Sbjct 13389 AAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATG 13448 Query 77540 TCTCTTATTG 77549 || | ||||| Sbjct 13449 TCGCATATTG 13458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||| || || || || | | || ||||| | ||||| || || || ||| Sbjct 7279 TGAAATTCTTTTGATAAAACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 7338 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 |||||||| |||| || || ||||| ||||| |||||||||||||| | ||||||||| Sbjct 7339 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 7398 Query 77247 TTTCTGAGACCATGTGT 77263 || | | ||||||||| Sbjct 7399 TTACGTAAACCATGTGT 7415 >seq51641 Length=269637 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 48218 TTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGC 48277 |||||||| ||| ||||||| || |||| ||| |||||||| || ||||| || || || Sbjct 49179 TTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGC 49120 Query 48278 AAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGTATCCACCGTTGTGCCCA 48334 |||||| |||||| || || ||||| |||| || |||||| | ||||| Sbjct 49119 AAATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCA 49060 Query 48335 ATCAGCCTTCTTCTTTACACAAGGCATTG 48363 |||||| || || || |||||||||| || Sbjct 49059 ATCAGCTTTTTTTTTAACACAAGGCACTG 49031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694198856556800