Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3179 295 1e-74 seq51498 156 6e-33 seq43701 123 4e-23 seq12393 104 3e-17 seq51641 98.7 1e-15 seq1 98.7 1e-15 seq34416 87.8 3e-12 >seq3179 Length=6207 Score = 295 bits (326), Expect = 1e-74 Identities = 623/917 (68%), Gaps = 23/917 (3%) Strand=Plus/Plus Query 46305 AAAATGATTATCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTC 46364 |||||||| || || ||||||| || ||| ||| || |||||||| || | | | || Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 46365 GAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAAC 46424 ||||||| ||||||| ||||| | ||| || | ||||| |||| |||||||| || || Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATT-GTGAC 3170 Query 46425 A-TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATAT 46483 || || || || | | | | ||| | ||||||||| |||| |||||| |||| Sbjct 3171 TGTTGTATATCTTATCGCAGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATAT 3230 Query 46484 ACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAA 46543 | ||||| || || ||||| || | | ||||| ||| || || | || Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAA 3290 Query 46544 ACTCTTGTTCAATAGTGACAGCATC--CGATATTAT--CGATGTTACTGTTTCCTCA-CT 46598 |||||| |||||| ||| || || | ||| | | | ||||| | ||| | | || Sbjct 3291 ACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGCT 3350 Query 46599 TGGTGGATGCATCAAATGTTTA-AACATTAAACATGCAAAATCACAATGAAGGCCTTCAT 46657 || | | ||| | ||| ||||| |||||||||||||| ||||| | ||||||| Sbjct 3351 TGTT------AACAATTTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCAT 3404 Query 46658 CTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCC 46717 | ||| ||| | ||| || ||||| || | || | | | || || | |||| Sbjct 3405 CCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCC 3464 Query 46718 AAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAA 46777 |||||||||| | || || || ||||| ||||| ||||| || |||||||| || |||| Sbjct 3465 AAAATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAA 3524 Query 46778 GTCTCTCTCCGTAACTGGCATCATTATGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTC 46836 | ||| ||||| |||| || | || ||||| || |||||| ||||||| Sbjct 3525 TACGCTCACCGTAGGTGGCGTC-CGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGT 3583 Query 46837 TTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTA 46896 ||| || | |||||| || || || || || ||||||| ||| | Sbjct 3584 CCGACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGA 3643 Query 46897 ACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGA 46956 | || || || ||||| || ||||||||||| || || | |||||| || || | ||| Sbjct 3644 ATGTACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGA 3703 Query 46957 AATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC-TGTACAAAATCGTTCAGACAA 47015 || ||| ||| || | ||||| | | ||| | || | | |||| || || Sbjct 3704 AACGAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAA 3759 Query 47016 ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATA 47075 ||| | | || ||||||||||||| |||||||||||||||| |||| |||||||| Sbjct 3760 ATTTTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATG 3819 Query 47076 TTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 47135 ||||| | || || ||||||| ||| |||||| |||| ||| ||||| || Sbjct 3820 CCTTTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTC 3879 Query 47136 AGCTGTCCAGAATGACGCCTCTGC--TTTTTTATACATATTCCATATATCACGATATTGG 47193 | |||| |||| | ||| |||||||||||| ||||||||||| |||||| Sbjct 3880 CACACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTT 3939 Query 47194 ATCGGAAAAATAACAAA 47210 || |||||||| ||||| Sbjct 3940 ATTGGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 156 bits (172), Expect = 6e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| | |||||| ||||||| | ||||||||||||||| ||||||||||||| Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || | || ||| |||||||| || |||||||| ||||| |||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||||| | ||| ||||||| |||||||| || || ||| ||| | ||| || | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 76699 AATATCAGAATGCCATGGTTC 76719 || || | |||||||||||| Sbjct 8938 GATGTCTGCATGCCATGGTTC 8918 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||| | |||| ||||| || || ||||| ||| | || || || |||||||| | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||||||||| ||||| ||||||||||| || ||||| | | ||| ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | |||| || | | || ||||||| |||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || |||| | || ||||| | ||||| || || || ||| Sbjct 12506 TGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 12447 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| || || ||||||||||| || ||||||||||| | ||||||||| Sbjct 12446 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 12387 Query 75842 TTTCTGAGACCATGTGT 75858 || | | ||||||||| Sbjct 12386 TTACGTAAACCATGTGT 12370 Score = 105 bits (116), Expect = 1e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 ||||| | ||| || | ||||| |||||| | ||| ||||| || | || |||||| Sbjct 12029 TTATAAGATTCATATGCTCCGTCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 11970 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||||| || ||||| || || | ||||| || | | | |||||| ||| |||||||| Sbjct 11969 TAATATATAGTTTCAAATATTTGTTTATTCAATAACATT-GCTTCATCACTGTCAAAAGG 11911 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 | | | | ||||||||||| || || |||||||| ||||||||||| || | ||| Sbjct 11910 AAACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATG 11851 Query 76135 TCTCTTATTG 76144 || | ||||| Sbjct 11850 TCGCATATTG 11841 >seq43701 Length=19211 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||| | |||| ||||| || || ||||| ||| | || || || |||||||| | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||||||||| ||||| ||||||||||| || ||||| | | ||| ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | |||| || | | || ||||||| |||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||| || || || |||| | || ||||| | ||||| || || || ||| Sbjct 7279 TGAAATTCTTTTGATAAAACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACTGAT 7338 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| |||| || || ||||||||||| || ||||||||||| | ||||||||| Sbjct 7339 TCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAACTA 7398 Query 75842 TTTCTGAGACCATGTGT 75858 || | | ||||||||| Sbjct 7399 TTACGTAAACCATGTGT 7415 Score = 100 bits (110), Expect = 4e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 75982 TTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTT 76041 |||||| | ||| ||||| || | || ||||||||||| || ||||| ||||| | || Sbjct 13296 TTCAGCCAATTCACAACTGGCTTTCAAGGCACCGTAATATATAGTTTCAAAAATTTGTTT 13355 Query 76042 ATT-AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTG 76100 ||| || | | | |||||| ||| ||||| ||| | | | ||||||||||| | Sbjct 13356 ATTCAATAACATT-GCTTCATCACTGTCAAAGGGAAACCTCATTAATATAAATGCATCAG 13414 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 | || |||||||| ||||||||||| || | ||||| | ||||| Sbjct 13415 CAAGACCCTGAACACCAATACCAATGGGACGATGTCGCATATTG 13458 >seq12393 Length=14882 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| | ||||| || ||||| | ||||||||||||||||||||||||||||| Sbjct 2746 TTCAAATTCTTTCCCCCAGACTTCATCAAGACCAGGACATTCATTCGGACACATCAATGT 2805 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| || | | ||| |||||||| || |||||||| ||||| |||||| Sbjct 2806 CCAATCTTGGTTGGTTTCAACACGTTTCATGAATAGATCAGGAATCCACAGAGCATAGTC 2865 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT-TTAAGATCTAGGAACTCCA 76697 || | | | ||| |||||| ||||||| ||| ||| ||| ||| | | || Sbjct 2866 TAAGTTATGAGCTCTTAATTCTTCCTTTCCTG-ATTGTTTCTTAGCATCCAAATAATCAC 2924 Query 76698 TAATATCAGAATGCCATGGTTCTA 76721 ||||| | |||||| ||||||| Sbjct 2925 AGATATCCGCATGCCACGGTTCTA 2948 >seq51641 Length=269637 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/148 (75%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 46708 TTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCG 46767 ||||||| ||| ||||| | || |||| ||| |||||||| || ||||| || || || Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 46768 AATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA---TGAATCCACCTTTGAGCCCAA 46824 ||||| |||||||| || || ||||| || | || |||||| | ||||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCAA 49059 Query 46825 TCAGCCTTTTTCTTTACACAAGGCATTG 46852 ||||| ||||| || |||||||||| || Sbjct 49058 TCAGCTTTTTTTTTAACACAAGGCACTG 49031 >seq1 Length=778493 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 ||||||||| || |||||||| ||||| ||||||||||||||||| || || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 || |||||||| | ||||| |||| |||| ||| || |||||| ||| Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTCA 566459 >seq34416 Length=2095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 |||||| | |||| ||||| | ||||||||||| |||| ||| | ||| ||||| || Sbjct 1726 TCAATAGCGCCTTCAATATCGCTGTGATGAATTCCAACAGAGACTCTCATTAACATGTGT 1667 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||| ||||| || ||| ||||||||||||||| ||||| |||| | ||| Sbjct 1666 TGAGGACGTTCAGCAACTTTACCATTTATTTTCAACAAATATGACCTTTCAAGAGT 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712452099878400