Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14329 102 2e-16 seq24757 89.7 1e-12 seq28095 86.0 1e-11 >seq14329 Length=486688 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||| | |||||| || |||||| ||||| ||||| |||| Sbjct 199979 ACCACCACGAAGACGAAGTACTAAATGTAAGGTTGATTCTTTCTGGATATTGTAATCAGA 199920 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | ||| || ||||| || |||||||| |||||||||||||| | || ||||| Sbjct 199919 TAACGTACGTCCATCTTCAAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTC 199866 >seq24757 Length=373871 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || |||||||||||||||||||| || | || ||||| || || | ||| || Sbjct 52706 ATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTTTCAATAGTATCTGATGGTTCAACC 52647 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| || |||||||| |||||||| Sbjct 52646 TCTAGGGTTATTGTCTTCCCAGTCAGTGTTTTAACGAAGATCTGCAT 52600 >seq28095 Length=6177 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||| Sbjct 2373 TAGTATAGTGGTTAGTATCTCCGCCTGTCACGCGGTAGACCGGGGTTCAATTCCCCG 2429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046013377954480