Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3179 224 1e-53 >seq3179 Length=6207 Score = 224 bits (248), Expect = 1e-53 Identities = 597/899 (66%), Gaps = 26/899 (3%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| |||||| ||| |||||||| ||||| | ||||||||||||| | || || || || Sbjct 3073 CATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTC 3132 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 | ||| || | ||||| |||| || ||||| | | || |||| | || Sbjct 3133 GATTGAGATCATATCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAGTC 3192 Query 23325 TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTT 23384 | |||| || || ||||| || | |||||||||||||| |||||| | ||| Sbjct 3193 AAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTT 3252 Query 23385 TATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGC 23444 || || || | | || | || || || || ||||||||| || || Sbjct 3253 AATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGC 3312 Query 23445 ATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTTAAA 23501 || | ||| |||||| |||| || ||| || || | || | | | || || Sbjct 3313 TTCATCAATAATTTGA-CAATG--TTTTTCTTTACACGGCTTGTTAACAATTTTTTTCAA 3369 Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 || |||||||||||||| ||||||| |||||||||||| ||| | |||||| ||||| Sbjct 3370 CATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAA 3429 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGA 23621 || || || | | | ||| | || | | ||||||||| || ||||||| || || Sbjct 3430 AGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGA 3489 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 ||| || ||||| ||||| ||||| || || |||| ||| ||| | || || | | Sbjct 3490 AAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTCCGA 3549 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC-ACACTC--AATTGTTTC 23738 || ||||| ||| | ||| | ||||| || | | ||| || || |||||| Sbjct 3550 ---CGAGATCCAATTTAAAGCCCATGTGGCCTT---TTGTCCGACAGTCGGAAATGTTTC 3603 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 |||||| || || || | |||||| ||| || || || ||||||| | Sbjct 3604 AATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAG 3663 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||||||||||| || || | ||||| || || | |||||| || ||| || |||| Sbjct 3664 GCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGC 3723 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||| | | || | |||| | ||| | ||||||||| |||||| ||||| Sbjct 3724 TTCCGGTACCTGGATATCAAGCAGAAAAGAGT---CTAAATTTTTAGCAACAATTCCATC 3780 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--GTTGATAAT 23976 ||||| ||||| || || | | || | |||||||| |||||| | |||| | Sbjct 3781 ACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGA-- 3838 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 ||| |||| || | | |||||| |||| ||||||||| || || ||| | | | | Sbjct 3839 TTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCC-ACGATGAGAC 3897 Query 24037 AAG-GC--ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 ||| || |||||||| | ||| ||||||| || || ||||||||| ||||| || Sbjct 3898 AAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521135213368000