Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq10175 93.3 3e-14 >seq10175 Length=5235 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| ||||||||| ||||| || ||||||||||| || ||||| || || || || || Sbjct 2167 CTTTATATTCTGCGCCAAAGTGTCTCCATTGGAAACCGTAAACTGGACCCAGATCACCGA 2226 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 |||| | ||| || ||||| ||||| ||| | || ||||||||| |||||||||| Sbjct 2227 CTTCGCGATCTTTCAATCCAAGATTATCCAAAAACTCCCGAGATCCATTGGCATCCCAAA 2286 Query 97517 T 97517 | Sbjct 2287 T 2287 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || |||||||| ||||| |||| | || | || || || ||||| || || || || Sbjct 275 GTAACATGGGCAATCATGTAAGTGAGAAGCGCGTAACTCGCGATGTTGAACGGAACTCCA 334 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCT-TTCCATCACACACATA 97235 |||||||||||||| |||| ||| ||||| ||||| || | || |||| || ||||| Sbjct 335 AGTCCCATATCAGCCGATCGTTGGTATAATTGACACGATAACTCCCCCATTGCATACATA 394 Query 97236 AAACTGA 97242 ||||||| Sbjct 395 AAACTGA 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344762578833170