Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19949 141 1e-28 >seq19949 Length=2497 Score = 141 bits (156), Expect = 1e-28 Identities = 329/491 (67%), Gaps = 24/491 (5%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| |||| || | ||| |||| ||| || |||||||||||||| |||||||| || Sbjct 1618 TTGCGGAAAAATATCATTCCTGCTCTAGGTCCCCTGAGAGTCTTGTGAGTTGTAGTTGTT 1677 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCC----GCAATCAAGCCCGC 127217 ||||| ||| ||| | ||||| || | | || ||| |||| ||| || | Sbjct 1678 ACAATATCAGAATGTTTGAAGGG----AGATTCAATTAACCCAGCAGCAACCAAACCAGA 1733 Query 127218 AATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCG 127277 | || || ||||| ||||| |||| | || | ||| || || | || |||| Sbjct 1734 TACATGAGCCATATCTGCCATAAGCAGAGCACCATTTTGATCAGCTATATTTCTAAATCT 1793 Query 127278 TCTATAGTCCAAGCGCCGAGGA-TAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGA 127336 ||| | ||||| | ||| ||||| || || || |||||||| |||| |||| Sbjct 1794 GGCATAAT-CAAGCACTCTGGAGTAGCAGCTAACTCCAGCAATGATTAGTTTAGGCTTGA 1852 Query 127337 ATAGATTGGCACTCT-CGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACC 127395 | | || || ||| | |||| | ||||||| | |||||||| | |||| ||| Sbjct 1853 ACAACTTTGCGTTCTCCTGCAA-CTGATCATAGTCAATCAGTCCAGTGTTTGGATTTACC 1911 Query 127396 TTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCGG----- 127443 ||||| ||||| || || || | ||| || || || | | | | | Sbjct 1912 TTGTATGGCATAGACTCAAAGAAAATTGAGGTTGCTGAGATTTTCTTCTTCTCAGTCATA 1971 Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || || || |||| || || || || || ||||| | ||||||||||| || || ||| Sbjct 1972 AAACCATGAGTCAAATGTCCACCATCAGGGAGATCCAAACCCATGATTCTTCCATGAGGT 2031 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 | ||| | ||||||| || ||||||||||| || || ||||| ||||| ||| | Sbjct 2032 TCAACAACAGCAGTGTAAACAGCAAAGTTGGCAGGTGATCCAGAGTATGGTTGCACATTC 2091 Query 127564 ACTCCCCATTC 127574 || |||||||| Sbjct 2092 ACGCCCCATTC 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736628768309560