Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq46785 91.5 3e-13 >seq46785 Length=3947 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 269090 TGGGCTCTGAAATGGATAAACGATAG---CGCGCCTTACGGAGAAAGGTTAGTTGCTTTT 269146 ||||| ||||| ||||| ||||| | | || || || ||| | | || |||||| Sbjct 164 TGGGCCCTGAAGTGGATCAACGACAAGAACTCGAGTTTTGGTGAACGAATCGTCGCTTTT 105 Query 269147 GCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAA 269206 || |||| ||||| || ||||| || || || || ||||| || ||| ||||||| Sbjct 104 GCATCTGTGGAAGGGATCTTCTTCAGCGGTTCGTTCGCTGCTATTTTCTGGCTGAAGAAG 45 Query 269207 AGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAG 269250 |||| || ||||| || |||||| ||| ||||||||||| || Sbjct 44 CGAGGTCTCATGCCCGGCCTAACTTACTCGAACGAATTGATCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144342659029948