Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq212668 185 1e-42 seq190167 152 8e-33 seq88250 134 2e-27 seq413067 91.5 2e-14 >seq212668 Length=438 Score = 185 bits (204), Expect = 1e-42 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||| || ||||| |||||||| ||||| |||||||| || Sbjct 325 GCCAAGCGTCATCGCAAAGTTCTCCGTGATAATATCCAAGGTATCACTAAGCCAGCAATT 266 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| ||||| || || ||||| ||||||| || |||| ||||| | | Sbjct 265 CGTCGTTTGGCTCGACGTGGAGGTGTGAAGCGCATCTCTGGCCTGATCTACGAAGAAACT 206 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| ||||| | | | ||| |||| |||||| | || |||||| Sbjct 205 CGTGGTGTGTTGAAGGTCTTCTTGGAAAGCGTCATCCGCGATGCTGTTACTTACACCGAG 146 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||| || || || ||||| | || || ||| |||||||||| || Sbjct 145 CATGCCAAGCGTAAGACAGTAACTGCCTTGGATGTTGTATACGCACTGAAACGTCAGGGT 86 Query 16673 CG 16674 || Sbjct 85 CG 84 >seq190167 Length=487 Score = 152 bits (168), Expect = 8e-33 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||||||||| | | ||||| |||||||||||||| |||||||| || || || || Sbjct 485 AAGCGTCATCGTAAAGTCCTTCGTGATAACATCCAAGGCATCACCAAACCCGCCATTCGC 426 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||| |||||||||| |||||||| || ||| | || || ||| |||||||||| | | Sbjct 425 CGTTTGGCTCGTCGAGGTGGAGTGAAACGTATTTCCGGTTTGATCTATGAAGAAACCAGA 366 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| |||||| | |||||| | | ||| ||| |||||| || || || || || Sbjct 365 GGTGTGTTGAAGGTTTTCCTCGAAAATGTTGTCCGTGATGCAGTCACATACACAGAACAT 306 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| ||||| |||||| | | ||| | || || ||||| || Sbjct 305 GCCAAACGCAAGACCGTCACCGCTCTCGATGTTGTATACGCATTAAA 259 >seq88250 Length=964 Score = 134 bits (148), Expect = 2e-27 Identities = 180/249 (72%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATC---GCAGATCTC---TTCGAGATAACATCCAAGGAATCACCAAGCC 16485 |||||||||||||| | | | | | ||| | || || || |||| |||||||| | Sbjct 458 CGCTAAGCGTCATCATCGTATAGCGCGCGTTCAAAATGACCTCGAAGGCATCACCAAATC 517 Query 16486 AGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA 16545 || || |||||| |||||||||| |||||||| || || | |||||| | |||||||| Sbjct 518 CGCCATTCGTCGTTTGGCTCGTCGAGGTGGAGTGAAACGCATTTCTGGAGTTGTCTATGA 577 Query 16546 AGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTA 16605 ||| | | | || |||| | || ||| | | |||| | | |||| | || || Sbjct 578 AGAAACTAGATGCGTGTTGAGAGTATTTCTCGAAAACGTTGTTCGTGATACAGTCACATA 637 Query 16606 TACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665 |||| ||||||| ||| | ||||||||| | | | ||| | || || ||||||||||| Sbjct 638 TACCCAGCACGCCAAAAGAAAGACTGTCGCAACACTTGATGTTGTGTACGCATTGAAACG 697 Query 16666 TCAAGGCCG 16674 ||||||||| Sbjct 698 TCAAGGCCG 706 >seq413067 Length=231 Score = 91.5 bits (100), Expect = 2e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16565 AAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT 16624 ||| |||| ||| ||| || || | |||||| || ||| |||||||| || || || Sbjct 13 AAGGTCTTTCTCGAGAATGTCATTCGTGATGCAGTCACCTACACCGAGCATGCCAAGCGC 72 Query 16625 AAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTAT 16684 |||||||||||| |||||||| ||||||| || ||||| | |||||| | | | || Sbjct 73 AAGACTGTCACCGCCATGGATGTCGTCTACGCTCTGAAAAGACAAGGCAGAACACTCTAC 132 Query 16685 GGTTTTGGAAGTTAA 16699 || ||||| ||||| Sbjct 133 GGATTTGGTGGTTAA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78637904333733