Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14090 118 7e-22 seq172868 114 9e-21 seq428052 104 2e-17 seq426000 91.5 1e-13 seq101549 86.0 4e-12 >seq14090 Length=2508 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||||| |||||||||||||| ||||||||| || |||||||| Sbjct 259 AAGCGCGTTCCCTTGGCTGCGGTTTCGCTAGATAATAGATAGGGACAGCGGGAATCTCGT 318 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 319 TGATCCATTCATGCGCGTCACTAATTAGATGATGA 353 >seq172868 Length=501 Score = 114 bits (126), Expect = 9e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATCCT 25963 |||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||| ||| Sbjct 197 GCCCGTTCCCTTGGTTGTGGTTTCCCTAGATAGTGGATAGCGGG-AATCTCGTTCATCAA 139 Query 25964 TTCATGCGCGTCACTAATTAGATGA 25988 ||||||||||||||||||||||||| Sbjct 138 TTCATGCGCGTCACTAATTAGATGA 114 >seq428052 Length=222 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||| | Sbjct 125 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCCC 66 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 65 GCCAATATTTAGCTTTA 49 >seq426000 Length=224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 5/68 (7%) Strand=Plus/Plus Query 25929 CTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTA 25983 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 1 CTAGATAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 60 Query 25984 GATGACGA 25991 |||||||| Sbjct 61 GATGACGA 68 >seq101549 Length=828 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||||||| |||||||||||| ||| |||||| ||||||||||||| ||||| Sbjct 258 CTCTCTCCTCAAAGTGCTTTTCAACTTTTCCT-ACGGTAGTTGTTCGCTATCGTTCTCGA 200 Query 20007 GGTAATATTTAGC 20019 | |||||||||| Sbjct 199 G--AATATTTAGC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332994776128511