Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq44796 95.1 2e-14 seq392488 87.8 4e-12 seq190180 84.2 4e-11 >seq44796 Length=1587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1244 GTCTCCGTAGCGCAATGGATAGCGCGTTGGACTTCTAATCCAAAGGTTCCGGGTTCGAGT 1185 Query 142113 CCCGCCAGAGAC 142124 |||| | ||||| Sbjct 1184 CCCGGCGGAGAC 1173 >seq392488 Length=243 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 89 AGCCTGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGGGTCGTGGGTTCGAG 30 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 29 CCCCACGTTGGGC 17 >seq190180 Length=485 Score = 84.2 bits (92), Expect = 4e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 142059 GTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGC 142117 |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 132 GTGGCGCAATGGACTAGCGCGTTGGACTTCTAATCCAAAGGTTGTGGGTTCGAATCCCAC 73 Query 142118 C 142118 | Sbjct 72 C 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1021538241464321