Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq228302 132 2e-25 seq178845 129 2e-24 seq46392 129 2e-24 seq30684 127 8e-24 seq106878 118 4e-21 seq175707 116 1e-20 seq56399 116 1e-20 seq51213 113 2e-19 seq177247 105 3e-17 seq47169 105 3e-17 seq38896 87.8 7e-12 seq20532 84.2 9e-11 >seq228302 Length=411 Score = 132 bits (146), Expect = 2e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||||||||||||| || ||| || | | |||||||| ||||| || ||| ||| Sbjct 77 CTCCTGAAGAAATTAGTTCAATGATTTTGATGAAAATGAAGGAAACTGCTGAATCTTATC 136 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || | | || | || || || ||||||| || ||||||||||||||| | |||| Sbjct 137 TCGGAGCAACTGTGTCCGACGCTGTTGTTACTGTGCCAGCTTATTTCAATGATTCCCAAC 196 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 ||||||| || || ||||| ||| || ||| |||||||||||||| || ||||| | Sbjct 197 GGCAAGCCACCAAGGATGCTGGAACCATCAGTGGCTTAAATGTTCTTCGTATCATTAACG 256 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGG 451449 | || || || |||||| | || ||||| Sbjct 257 AGCCCACTGCCGCTGCTATCGCCTATGG 284 >seq178845 Length=945 Score = 129 bits (142), Expect = 2e-24 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||||| |||||| || || ||| || || ||||| |||||| ||||||| ||||| | Sbjct 523 CAGTTAATGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTA 464 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | |||||||| ||| || ||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 463 CCAAAGATGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAG 404 Query 451431 CAGCTGCTCTAGCATATGG 451449 | |||||| |||||||||| Sbjct 403 CTGCTGCTATAGCATATGG 385 >seq46392 Length=5330 Score = 129 bits (142), Expect = 2e-24 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||||| |||||| || || ||| || || ||||| |||||| ||||||| ||||| | Sbjct 423 CAGTTAATGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTA 482 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | |||||||| ||| || ||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 483 CCAAAGATGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAG 542 Query 451431 CAGCTGCTCTAGCATATGG 451449 | |||||| |||||||||| Sbjct 543 CTGCTGCTATAGCATATGG 561 >seq30684 Length=2398 Score = 127 bits (140), Expect = 8e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 || ||||| ||||| ||| || ||||||||| || |||||| | | ||||||| Sbjct 1430 GGAGAAACCAAAACATTTTTCCCAGAAGAAATTAGTTCAATGGTTTTGTTGAGAATGAAA 1371 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 ||||| || ||| ||| |||| | || || || || || | |||||||| ||| Sbjct 1370 GAAACCGCTGAAGCCTATCTTGGCAAAACTGTGACCGACGCCGTCGTCACTGTTCCAGCT 1311 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 |||||||| ||| | ||||| ||||| || || ||||| ||| || | ||||| ||| Sbjct 1310 TATTTCAACGATTCTCAACGTCAAGCTACCAAGGATGCTGGAACCATCTCCGGTTTGAAT 1251 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||||| || || ||||||||||| || || ||||| Sbjct 1250 GTTCTCCGTATCATTAATGAACCGACTGCTGCTGC 1216 >seq106878 Length=786 Score = 118 bits (130), Expect = 4e-21 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||||| |||||||| || ||||| ||| || || || || | ||||| Sbjct 257 GTTCTTATGAAAATGAAGGAGACAGCTGAAAGCTACCTTAACCAACCCGTCAAAAATGCA 198 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||||| ||||||||||| ||| | ||||| || ||||| |||||||| || Sbjct 197 GTTGTTACTGTTCCAGCTTATTTCAACGATTCCCAACGCCAGGCAACCAAAGATGCTGGT 138 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||| ||||| | || || | || | || |||||||| ||||| ||||| || || Sbjct 137 CAGATTTCTGGTCTTAACGTCTTGCGTGTAATCAATGAACCCACAGCCGCTGCCCTTGCC 78 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| || | | |||| || || |||| ||| || | |||||| ||| Sbjct 77 TATGGCCTCG---------ACAAAACTGAGGACAAAATCATTGCTGTCTATGATTTAGGT 27 Query 451505 GGAGGAAC 451512 || ||||| Sbjct 26 GGTGGAAC 19 >seq175707 Length=3075 Score = 116 bits (128), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 || |||| || ||||| | || ||||| || || ||| || | |||||||| Sbjct 126 GGCGAAAAGAAGACTTTCACCCCGGAAGAGATCAGCTCCATGATTTTGTTGAAAATGAAG 185 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 || || || || |||| |||| | ||||||||||| || || |||||||| ||| Sbjct 186 GAGACGGCTGAGGCATATCTTGGAAAAACTGTTACTGATGCTGTCATCACTGTTCCGGCT 245 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAA 451401 | |||||||||| | ||||| || || ||||| || || || ||| ||| | ||| | || Sbjct 246 TGTTTCAATGATTCTCAACGTCAGGCCACTAAGGACGCGGGTACA-ATTTCCGGTATGAA 304 Query 451402 TGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||||| ||||| || || ||||| ||||| || ||| | || || ||||| Sbjct 305 CGTTCTCCGAATCATCAACGAACCGACAGCTGCCGCTATTGCCTACGGACT 355 >seq56399 Length=3075 Score = 116 bits (128), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 || |||| || ||||| | || ||||| || || ||| || | |||||||| Sbjct 126 GGCGAAAAGAAGACTTTCACCCCGGAAGAGATCAGCTCCATGATTTTGTTGAAAATGAAG 185 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 || || || || |||| |||| | ||||||||||| || || |||||||| ||| Sbjct 186 GAGACGGCTGAGGCATATCTTGGAAAAACTGTTACTGATGCTGTCATCACTGTTCCGGCT 245 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAA 451401 | |||||||||| | ||||| || || ||||| || || || ||| ||| | ||| | || Sbjct 246 TGTTTCAATGATTCTCAACGTCAGGCCACTAAGGACGCGGGTACA-ATTTCCGGTATGAA 304 Query 451402 TGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||||| ||||| || || ||||| ||||| || ||| | || || ||||| Sbjct 305 CGTTCTCCGAATCATCAACGAACCGACAGCTGCCGCTATTGCCTACGGACT 355 >seq51213 Length=3572 Score = 113 bits (124), Expect = 2e-19 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 451263 TGGTTCTTACT-AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 ||||||| ||| |||||||| |||||||| ||| ||| | ||| || |||||| Sbjct 1391 TGGTTCT-ACTGAAAATGAAGGAAACAGCTGAAGCATACCTCGGTAAAAGTGTGACTGAT 1449 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || | || || || ||||| ||||| ||| | ||||| ||||| || |||||||| Sbjct 1450 GCTGTTGTGACCGTACCAGCTTACTTCAACGATTCGCAACGACAAGCTACCAAAGATGCT 1509 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || ||| || ||||||||||| || || || ||||| || ||||||||| | Sbjct 1510 GGCACCATCAGTGGCTTGAATGTTCTTCGGATCATCAACGAACCAACTGCAGCTGCTATT 1569 Query 451442 GCATATGGA 451450 || |||||| Sbjct 1570 GCGTATGGA 1578 >seq177247 Length=926 Score = 105 bits (116), Expect = 3e-17 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAA-AATGAAAGAAACAGCAGAACAATATAT 451302 ||||| ||||| || ||||| |||| ||| |||||| || || | ||| ||| | Sbjct 267 CCTGAGGAAATCAGCTCCATGGT-CTTATTAAGAATGAAGGAGACTTCTGAAGCATACCT 209 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | || ||||| ||||| | ||||| || ||||||||||| || ||||||| Sbjct 208 TGCAAAACT-GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACG 150 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||| || |||||||| || |||||||| || || || | ||||||| || || Sbjct 149 TCAAGCTACCAAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGA 90 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||| ||||| ||| | || ||||| Sbjct 89 ACCTACCGCAGCCGCTATTGCTTATGG 63 >seq47169 Length=4500 Score = 105 bits (116), Expect = 3e-17 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAA-AATGAAAGAAACAGCAGAACAATATAT 451302 ||||| ||||| || ||||| |||| ||| |||||| || || | ||| ||| | Sbjct 1919 CCTGAGGAAATCAGCTCCATGGT-CTTATTAAGAATGAAGGAGACTTCTGAAGCATACCT 1977 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | || ||||| ||||| | ||||| || ||||||||||| || ||||||| Sbjct 1978 TGCAAAACT-GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACG 2036 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||| || |||||||| || |||||||| || || || | ||||||| || || Sbjct 2037 TCAAGCTACCAAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGA 2096 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||| ||||| ||| | || ||||| Sbjct 2097 ACCTACCGCAGCCGCTATTGCTTATGG 2123 >seq38896 Length=1390 Score = 87.8 bits (96), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||||||||| | ||||| || | || ||||| || | || ||| | Sbjct 319 TTTGCCGCTGAAGAAATTAGCGCCATGGTCCTCAGCAAGATGAAGGAGATTGCTGAAGCA 378 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | ||| || || ||| |||| ||| | ||||| || ||||| |||| ||||| | Sbjct 379 TATTTGGGTAAACCCGTCACTCATGCCGTAGTAACTGTCCCAGCTTACTTCACTGATGGA 438 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||| | ||||| || || ||||| ||| || ||||| | | ||| | || || || Sbjct 439 CAAAGACAAGCCACCAAGGATGCTGGAACCATCTCTGGTCTTCAAGTTATGCGTATCATC 498 Query 451418 AATGAACC 451425 || ||||| Sbjct 499 AACGAACC 506 >seq20532 Length=1724 Score = 84.2 bits (92), Expect = 9e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 391151 AGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG 391210 ||||||||| || || |||||||| || || ||| | || || ||||||||||||||| | Sbjct 694 AGGAATTCCCCCAGACCAACAACGATTGATCTTCGCTGGCAAGCAACTTGAAGATGGACG 635 Query 391211 AACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAG 391270 ||| ||| ||||| ||||| | ||||| | || ||||| | ||| | || | || Sbjct 634 AACCTTGAGCGATTACAATATCCAAAAGGAGTCGACCCTTCATCTTGTACTCCGATTAAG 575 Query 391271 AGGA 391274 |||| Sbjct 574 AGGA 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1963611246420348