Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq30684 127 3e-24 seq51213 125 9e-24 seq14587 116 5e-21 seq241202 95.1 2e-14 seq177246 93.3 5e-14 seq47169 93.3 5e-14 seq177247 89.7 6e-13 seq175707 86.0 8e-12 seq56399 86.0 8e-12 seq5841 84.2 3e-11 >seq30684 Length=2398 Score = 127 bits (140), Expect = 3e-24 Identities = 197/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 7556 CCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCG 7615 |||| || ||||| | |||||| | || || | ||||| || | |||||| || Sbjct 1153 CCCAAATCGAAAATCAAAACGTTCTTCTCTTCACCAACTTTCTTGTCCAAACCGTAAGCA 1212 Query 7616 ATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC 7675 || || || || || ||||||||||| ||||| ||| |||| || | || ||| | Sbjct 1213 ATGGCAGCAGCAGTCGGTTCATTAATGATACGGAGAACATTCAAACCGGAGATGGTTCCA 1272 Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || ||||| ||||| |||||||| || || || || || || ||||| ||| Sbjct 1273 GCATCCTTGGTAGCTTGACGTTGAGAATCGTTGAAATAAGCTGGAACAGTGACGACGGCG 1332 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 || || || | || || ||||| | ||| ||| | ||||||||| | | |||||| Sbjct 1333 TCGGTCACAGTTTTGCCAAGATAGGCTTCAGCGGTTTCTTTCATTCTCAACAAAACCATT 1392 Query 7796 GATGAAATCTCTTCAGCCGCAAACTG-TTTCGTTTCACC 7833 || ||| ||||| | | ||| || ||| ||||| || Sbjct 1393 GAACTAATTTCTTCTG-GGAAAAATGTTTTGGTTTCTCC 1430 Score = 105 bits (116), Expect = 8e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||||||||| ||| ||||||||||| || || | ||| ||| || ||||| ||||| Sbjct 562 GAACAAGTCGCCACAAAGTTCCTCAAATCGAGCTCTGGTGATGCTAGTGTAGAAGTCAAC 621 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 || ||| | | ||||| ||||| ||| | | ||| || | ||||| | |||| ||| Sbjct 622 TCCCTCGAAGAGAGAATCGATTTCGATGCTAGCTTGAGCAGATGAAGAGATGGTTCTCTT 681 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 ||| |||||||| || ||||| | ||| | | |||||| ||| | ||||| || Sbjct 682 TGCACGCTCACAAGCGGTTCGAAGACGTCTCAAGGCACGTTTGTTGGGTGTGATATCCTT 741 Query 7408 CTTATGTTTACGTTTAAACTC 7428 ||| || || || || ||||| Sbjct 742 CTTGTGCTTGCGCTTGAACTC 762 >seq51213 Length=3572 Score = 125 bits (138), Expect = 9e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 || ||||| ||||| || || |||||||| || || || |||||| |||| |||| Sbjct 1577 CCATACGCAATAGCAGCTGCAGTTGGTTCGTTGATGATCCGAAGAACATTCAAGCCACTG 1518 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | |||||||| || |||||||||||||||||||| ||||| || || || || Sbjct 1517 ATGGTGCCAGCATCTTTGGTAGCTTGTCGTTGCGAATCGTTGAAGTAAGCTGGTACGGTC 1458 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 || || || || || || | |||||||| || | ||| || | || |||||||| Sbjct 1457 ACAACAGCATCAGTCACACTTTTACCGAGGTATGCTTCAGCTGTTTCCTTCATTTTCAGT 1398 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||||||| || ||||| || || ||| ||||||||| || Sbjct 1397 AGAACCACGGAACTGATCTCCTCTGCGAAGAACCTTTTCGTTTCTCC 1351 >seq14587 Length=3908 Score = 116 bits (128), Expect = 5e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||||||| || |||| || |||| ||| |||||||||||||| || ||||||| Sbjct 2953 TTCATCTTCAGCTGCGAACTTCTCAGCATTTTGAACCATCTTTTCAATTTCCTCTTTCGT 3012 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | ||| || || ||| |||| || |||||||| || || | |||||||||| Sbjct 3013 GAGTCTGTTGTTGTCGTTCTTAATTGTGATCTTTTCCTTGTTGCCAGTTCCCTTATCTTC 3072 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||| ||| | || || |||||| ||||| ||| | |||||| || Sbjct 3073 GGCGGACACACGCAAGAGTCCGTTCACATCAATCTCGAATGATACTTCAATTTGAGGGAC 3132 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| || ||||| | |||||| || |||||||| ||| |||| || | ||||||| | Sbjct 3133 ACCTCTTGGTGCTGGTGGAATTCCGGTTAAATCGAATTTACCGAGATGATGGTTATCCTT 3192 Query 6808 CGCCTTCTTACGTTCACCT 6826 || | | || |||||| Sbjct 3193 TACCATAGTTCGCTCACCT 3211 >seq241202 Length=389 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||| || || || || |||||||| || ||||||| |||||| || ||| ||||| Sbjct 163 TCCAATCAGTCGTTTGGCATCAAATACAGTGTTTTCGGGGTTAGAGGTCAGTTGATTCTT 222 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| ||| | | | || || || || || |||||||| | Sbjct 223 GGCGGCATCTCCAATGAGACGGTCACCTTCTGCGGTGAAAGCCACATATGATGGGGTGAT 282 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 || || |||||||| || ||||||||||| || || |||||| | || ||||| Sbjct 283 ACGGTTTCCTTGGTCATTGGCAATAATTTCAACACGACCGTTTTTGTATACTCCGAC 339 >seq177246 Length=1737 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || |||| || |||||||| || || ||||| || | ||||| ||||| Sbjct 1219 CGGAAAAGATCGTTACAGAGCTCCTCAAATCGGGCTCGGGTGATTGTGGTATAAAAATCC 1278 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 || ||||| | || || ||||||||| | | ||| | || ||| || | ||||| Sbjct 1279 TTTCCTTCGTAAAGGGAGTCGATTTCAATGTTGGCTTGGGTCGACGATGAGATGGTTCGT 1338 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT--ACCGGAAATAT 7403 ||||| | ||||| || ||||| | ||| | | || || ||| | | || | | Sbjct 1339 TTTGCTCTTTCACAAGCTGTTCGAAGACGTCTCAATGCCCGTTTGTTTGAACTGA--TGT 1396 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||||| || || ||||||||||||| | |||||| Sbjct 1397 CTTTCTTGTGCTTGCGTTTAAACTCTTTAATGAAGTG 1433 >seq47169 Length=4500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || |||| || |||||||| || || ||||| || | ||||| ||||| Sbjct 3282 CGGAAAAGATCGTTACAGAGCTCCTCAAATCGGGCTCGGGTGATTGTGGTATAAAAATCC 3223 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 || ||||| | || || ||||||||| | | ||| | || ||| || | ||||| Sbjct 3222 TTTCCTTCGTAAAGGGAGTCGATTTCAATGTTGGCTTGGGTCGACGATGAGATGGTTCGT 3163 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT--ACCGGAAATAT 7403 ||||| | ||||| || ||||| | ||| | | || || ||| | | || | | Sbjct 3162 TTTGCTCTTTCACAAGCTGTTCGAAGACGTCTCAATGCCCGTTTGTTTGAACTGA--TGT 3105 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||||| || || ||||||||||||| | |||||| Sbjct 3104 CTTTCTTGTGCTTGCGTTTAAACTCTTTAATGAAGTG 3068 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||| ||||| |||||||||| || |||||| || || ||||| |||||||| | Sbjct 1457 CAAAAATAGTGTTGATGGGGTTCATTGCAACTTGGTTTTTGGCTGCGTCTCCGATAAGTC 1398 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 ||| ||| | || || |||| || | |||| |||||||| || |||||||| ||| Sbjct 1397 TTTCGGTAT---CGGTGAAACCGACATA-GCTGGGAGTCGTTCGGTTTCCTTGGTCATTC 1342 Query 8075 GCAATAATTTCTAC 8088 |||||||| || || Sbjct 1341 GCAATAATCTCAAC 1328 >seq177247 Length=926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/134 (76%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||| ||||| |||||||||| || |||||| || || ||||| |||||||| | Sbjct 729 CAAAAATAGTGTTGATGGGGTTCATTGCAACTTGGTTTTTGGCTGCGTCTCCGATAAGTC 788 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 ||| ||| | || || |||| || | |||| |||||||| || |||||||| ||| Sbjct 789 TTTCGGTAT---CGGTGAAACCGACATA-GCTGGGAGTCGTTCGGTTTCCTTGGTCATTC 844 Query 8075 GCAATAATTTCTAC 8088 |||||||| || || Sbjct 845 GCAATAATCTCAAC 858 >seq175707 Length=3075 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 || ||||| |||| || | | || |||| | ||||||||||| || |||| Sbjct 2176 TTTGATTTGTCGAATTTCGCGCCTTTCAGTGCCTGCTCGACAGGTTCGATTGTGGCACGG 2117 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || || || || ||||| || ||||| || | ||| ||| ||| ||||| || || Sbjct 2116 AATAAATCATCGCAAAGTTCTTCGAAACGAGCTCTGGTGATGCTTGTGTAGAAGTCGACA 2057 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || ||||| | || || || |||||| ||| ||||| | || |||| ||||| |||| Sbjct 2056 CCTTCGTAGAGAGAGTCGATCTCAATGCTTGCTTGTGTGGATGATGATATCGTTCTCTTT 1997 Query 7349 GCGCGCTCACACGCCGT 7365 || || ||||| || || Sbjct 1996 GCACGTTCACAAGCAGT 1980 >seq56399 Length=3075 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 || ||||| |||| || | | || |||| | ||||||||||| || |||| Sbjct 2176 TTTGATTTGTCGAATTTCGCGCCTTTCAGTGCCTGCTCGACAGGTTCGATTGTGGCACGG 2117 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || || || || ||||| || ||||| || | ||| ||| ||| ||||| || || Sbjct 2116 AATAAATCATCGCAAAGTTCTTCGAAACGAGCTCTGGTGATGCTTGTGTAGAAGTCGACA 2057 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || ||||| | || || || |||||| ||| ||||| | || |||| ||||| |||| Sbjct 2056 CCTTCGTAGAGAGAGTCGATCTCAATGCTTGCTTGTGTGGATGATGATATCGTTCTCTTT 1997 Query 7349 GCGCGCTCACACGCCGT 7365 || || ||||| || || Sbjct 1996 GCACGTTCACAAGCAGT 1980 >seq5841 Length=977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/208 (69%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| || || |||||| ||||| || || || | || || ||| || |||||| Sbjct 540 CGGAATAAATCGGAACACAGCTCCTCGAAGCGAGCCCTCGTGATATTTGTGTAAAAATCA 599 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 || || ||||| | ||||||||||| ||| | | ||| | | ||| || | |||| Sbjct 600 ACTCCTTCGTAAAGAGAATCAATTTCTATGCTCGCTTGCGTTGACGAGGACATTGTTCTT 659 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA---AATA 7402 ||||| || |||||||| ||| ||| ||| || | || ||| ||| || |||| Sbjct 660 TTTGCACGTTCACACGCGGTTTGTAGACGTCGCACCGCTCGC---TTATTTGATTGAATA 716 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT 7430 || ||| || || ||||||||||| Sbjct 717 TCCAACTTGTGCTTGTTTTTAAACTCTT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631335650616040