Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq20532 109 1e-18 seq5824 84.2 5e-11 >seq20532 Length=1724 Score = 109 bits (120), Expect = 1e-18 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTC 194990 ||||| ||||| || ||||| ||||| |||||||||||| |||| |||| |||||||| Sbjct 587 ACAAGATGAAGGGTCGACTCCTTTTGGATATTGTAATCGCTCAAG-GTTCGTCCATCTTC 645 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || ||||| || |||||||| | ||||||||||||||| ||||| ||| Sbjct 646 AAGTTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATTCCT 694 >seq5824 Length=3014 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||||||||| |||||||| ||||| ||||| ||| || |||||| Sbjct 259 CCTTCTTTGTCTTGAATTTTAGCTTTGACGTTTTCAATTGTGTCTGAAGCCTCAACTTCA 200 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| ||||| || || || || | ||||| Sbjct 199 AGTGTGATGGTCTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102682724145527