Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11070 98.7 1e-15 >seq11070 Length=7227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || ||||| || | || |||| ||||||||||| || ||||| || ||| Sbjct 4716 TGAAATTCGCCGGATAGAACACGTCGTGTATAAATATTACTTGTGTACGGTTCAATTGAT 4657 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 || |||||||||| ||| || || |||||||| || ||||||| ||| Sbjct 4656 TCGTTATTTCCAAGAATCTGTGCGGTTGATGCAGTCGGCATGGGTGC 4610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || |||||||| | || | |||| | || ||||| | Sbjct 6096 TCCACCCATAGAAATGCATGCTTGTTAATTTGCCAAAATTTGGTTGGGCGATGTGAATGT 6037 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||| |||||||||||||| ||| ||||| | ||||| ||||| | | || | Sbjct 6036 TGAGACTTTGACTCTGATCAACAAAAGCACCCCGGTCAGCCGCCATCTTGATGATGTTCT 5977 Query 47170 TTTGTGGTATCTCCCATACTGTT 47192 | || | |||||||| |||||| Sbjct 5976 TCTGCGAAATCTCCCAAACTGTT 5954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558748225512840