Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq30684 138 9e-27 seq44539 125 6e-23 seq178845 123 2e-22 seq46392 123 2e-22 seq51213 116 3e-20 seq177247 113 4e-19 seq47169 113 4e-19 seq106878 109 4e-18 seq228302 100 2e-15 seq131350 91.5 1e-12 >seq30684 Length=2398 Score = 138 bits (152), Expect = 9e-27 Identities = 162/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| ||||| |||||| ||||| || |||||||| ||| ||||||| |||| || Sbjct 1420 AAACATTTTTC-CCAGAAGAAATTAGTTCAATGGTTTTGTTGAGAATGAAAGAAACCGCT 1362 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 || | | |||| || || || || || || | ||||| ||||| ||||| || Sbjct 1361 GAAGCCTATCTTGGCAAAACTGTGACCGACGCCGTCGTCACTGTTCCAGCTTATTTCAAC 1302 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 || || |||||||||||||| || ||||||||| || | || | |||||||| ||| Sbjct 1301 GATTCTCAACGTCAAGCTACCAAGGATGCTGGAACCATCTCCGGTTTGAATGTTCTCCGT 1242 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || |||||||| ||||||||||| |||| || || Sbjct 1241 ATCATTAATGAACCGACTGCTGCTGCCATTGCTTACGG 1204 Score = 96.9 bits (106), Expect = 3e-14 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||||||||||||||| || ||||| |||| || || ||||||| ||||||| Sbjct 1875 GTTGAAATTATTGCCAATGACCAGGGTAATCGAACCACACCCAGTTATGTTGCTTTCACA 1816 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || ||||||| ||| ||||||||||||| ||| Sbjct 1815 GACACTGAACGTTTGATTGGTGATGCAGCCAAA 1783 Score = 95.1 bits (104), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 552213 CCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAA 552269 || ||||||||||| || ||||| || || | || || |||||| | ||| ||| Sbjct 325 CCTGATGAGGCTGTCGCTTATGGCGCTGCTGTCCAGGCTGCTATTTTGAGCGGAGATCAA 266 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 | ||| || |||||| | || | ||| | |||||| |||| || ||||||||| | Sbjct 265 TC---CGAAGAAGTACAAAGTCTTTTGCTTCTTGATGTTGCTCCACTTTCTCTTGGTATT 209 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||| | ||| ||| | |||||| |||||| | | || || ||| |||| ||| Sbjct 208 GAAACTGCTGGTGGTGTGATGACTGCACTTATCACTCGTAACACCACTGTTCCAACCAAA 149 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGT 552433 | |||||||| || |||| || || || || ||| | | ||| Sbjct 148 CAGTCTCGTGTTTTCACTACTTACTCTGACAACCAACCCGGTGT 105 >seq44539 Length=5866 Score = 125 bits (138), Expect = 6e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 930663 ATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACC 930722 ||||| | |||||| || |||||||| ||||| |||||| |||| ||||||||||| || Sbjct 763 ATTGACTATTCTTCTCCTAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGTTCAACA 822 Query 930723 ATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTC 930782 || |||||||| | ||| | | | | ||||||| ||| | | ||| || | Sbjct 823 ATCATTGGAGATTGTTTGGGAAACCTTTTTGAATATCTGGGACATGATGTTTTGAGACTT 882 Query 930783 AATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||||| ||||||| ||||||||||||||||||||| ||||||| Sbjct 883 AATCACGTTGGTGACTGGGGAACACAATTTGGTATGCTAATTGC 926 >seq178845 Length=945 Score = 123 bits (136), Expect = 2e-22 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTAC 550395 |||||||||||| | |||||||||| || || | | | | | | || ||||| Sbjct 575 TCTATGGTTTTATACAGGATGAAACAAATTGC-AGAGACGTATCTCAATAAAACAGTTAA 517 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| || || ||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 516 TGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTACCAAAGA 457 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||||| || ||||| | || ||||| || || | ||||| ||||| |||||||| Sbjct 456 TGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAGCTGCTGC 397 Query 550516 ACTTGCATATGG 550527 | |||||||| Sbjct 396 TATAGCATATGG 385 >seq46392 Length=5330 Score = 123 bits (136), Expect = 2e-22 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAAGTTAC 550395 |||||||||||| | |||||||||| || || | | | | | | || ||||| Sbjct 371 TCTATGGTTTTATACAGGATGAAACAAATTGC-AGAGACGTATCTCAATAAAACAGTTAA 429 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| || || ||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 430 TGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTACCAAAGA 489 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||||| || ||||| | || ||||| || || | ||||| ||||| |||||||| Sbjct 490 TGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAGCTGCTGC 549 Query 550516 ACTTGCATATGG 550527 | |||||||| Sbjct 550 TATAGCATATGG 561 >seq51213 Length=3572 Score = 116 bits (128), Expect = 3e-20 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATG 550400 ||||| || |||||||||| ||||||| || | | ||| || || || |||| Sbjct 1391 TGGTTCTACTGAAAATGAAGGAAACAGCTGAAGCATACCTCGGTAAAAGTGTGACTGATG 1450 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 | || | || |||||||| || || || || || ||||| |||||||| |||||||||| Sbjct 1451 CTGTTGTGACCGTACCAGCTTACTTCAACGATTCGCAACGACAAGCTACCAAAGATGCTG 1510 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | || ||| | ||||||||||| || ||||| ||||| ||||| ||||| ||| Sbjct 1511 GCACCATCAGTGGCTTGAATGTTCTTCGGATCATCAACGAACCAACTGCAGCTGCTATTG 1570 Query 550521 CATATGGACTTGAT 550534 | |||||| | ||| Sbjct 1571 CGTATGGATTGGAT 1584 >seq177247 Length=926 Score = 113 bits (124), Expect = 4e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || ||||| ||||||| ||||| ||||| || |||||||||||||||||||| Sbjct 199 GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACGTCAAGCTACC 140 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||| | || || | | |||||||| |||||||| || Sbjct 139 AAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGAACCTACCGCA 80 Query 550511 GCTGCACTTGCATATGG 550527 || || |||| ||||| Sbjct 79 GCCGCTATTGCTTATGG 63 >seq47169 Length=4500 Score = 113 bits (124), Expect = 4e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || ||||| ||||||| ||||| ||||| || |||||||||||||||||||| Sbjct 1987 GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACGTCAAGCTACC 2046 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||| | || || | | |||||||| |||||||| || Sbjct 2047 AAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGAACCTACCGCA 2106 Query 550511 GCTGCACTTGCATATGG 550527 || || |||| ||||| Sbjct 2107 GCCGCTATTGCTTATGG 2123 >seq106878 Length=786 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| ||||| ||||| || || || ||||| || || || ||||||| Sbjct 202 ATGCAGTTGTTACTGTTCCAGCTTATTTCAACGATTCCCAACGCCAGGCAACCAAAGATG 143 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||| |||| ||||| || | ||| | ||||||||||| || || ||||| | Sbjct 142 CTGGTCAGATTTCTGGTCTTAACGTCTTGCGTGTAATCAATGAACCCACAGCCGCTGCCC 83 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 82 TTGCCTATGGCCTCGACAAA 63 >seq228302 Length=411 Score = 100 bits (110), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 550316 TTTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG 550373 ||||||| | ||| ||||| || ||| |||| ||||||||||| |||| || Sbjct 71 TTTTCACTCCTGAAGAAATTAGTTCAATGATTTTGATGAAAATGAAGGAAACTGCTGAAT 130 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | | || | || | || || || | ||||| ||||| ||||| ||||| | Sbjct 131 CTTATCTCGGAGCAACTGTGTCCGACGCTGTTGTTACTGTGCCAGCTTATTTCAATGATT 190 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | ||||| ||||| || || ||||||||| || ||| | |||||||||||||| | Sbjct 191 CCCAACGGCAAGCCACCAAGGATGCTGGAACCATCAGTGGCTTAAATGTTCTTCGTATCA 250 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || || || ||||| ||||| | || ||||| Sbjct 251 TTAACGAGCCCACTGCCGCTGCTATCGCCTATGG 284 >seq131350 Length=643 Score = 91.5 bits (100), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 |||||| | |||||||| || || || ||||| ||||| || || ||||| ||| | Sbjct 302 GAAGTTTCTGATGCAGTGATCACCGTTCCAGCTTATTTCTCAGATTCCCAACGACAATCA 361 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 ||| ||||||||| |||||| || || |||| | |||||||||||||| || Sbjct 362 ACTCGAGATGCTGGTTCTATTGCAGGTCTACATGTGGTGAAAATTATCAATGAACCCACG 421 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAAA 550537 || || || |||| ||||| ||||| ||| Sbjct 422 GCAGCCGCGATTGCTTATGGTCTTGACAAA 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4004002343672690