Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq177257 86.0 1e-11 seq57361 86.0 1e-11 >seq177257 Length=2661 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 151313 TTCGATATGTCCGAATATGCACAAGAACATAACGTTTCTAAACTTATTGGTTCGCCTCCA 151372 || |||||||| |||||| | || ||||| | ||| |||| ||||||||||| |||||| Sbjct 1207 TTGGATATGTCTGAATATCAAGAAAAACATGAAGTTGCTAAGCTTATTGGTTCTCCTCCA 1148 Query 151373 GGTTATGTAGGTCATGACTCTGGTAATGGTATGCTACTTGATAAAATTGAAGCACATCCT 151432 || |||||||| |||||| || ||| ||| | | ||||||| | || | Sbjct 1147 GGATATGTAGGCCATGACCAAGG---AGGTCAGCT-CACAAAGAAATTGAGGGACCAACC 1092 Query 151433 AACTG-TATTTTGCTTCTCGATGAAATTGAGAAAGCACAT 151471 || || |||| ||||| | |||||| | || ||||| ||| Sbjct 1091 AAGTGCTATTGTGCTTTTTGATGAAGTGGACAAAGCTCAT 1052 >seq57361 Length=2661 Score = 86.0 bits (94), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 151313 TTCGATATGTCCGAATATGCACAAGAACATAACGTTTCTAAACTTATTGGTTCGCCTCCA 151372 || |||||||| |||||| | || ||||| | ||| |||| ||||||||||| |||||| Sbjct 1207 TTGGATATGTCTGAATATCAAGAAAAACATGAAGTTGCTAAGCTTATTGGTTCTCCTCCA 1148 Query 151373 GGTTATGTAGGTCATGACTCTGGTAATGGTATGCTACTTGATAAAATTGAAGCACATCCT 151432 || |||||||| |||||| || ||| ||| | | ||||||| | || | Sbjct 1147 GGATATGTAGGCCATGACCAAGG---AGGTCAGCT-CACAAAGAAATTGAGGGACCAACC 1092 Query 151433 AACTG-TATTTTGCTTCTCGATGAAATTGAGAAAGCACAT 151471 || || |||| ||||| | |||||| | || ||||| ||| Sbjct 1091 AAGTGCTATTGTGCTTTTTGATGAAGTGGACAAAGCTCAT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140557994359938