Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq46785 89.7 1e-12 seq88159 87.8 3e-12 >seq46785 Length=3947 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||||| || | || || ||||||||||| || ||||| || || |||| Sbjct 25 AGGCCGGGCATGAGACCTCGCTTCTTCAGCCAGAAAATAGCAGCGAACGAACCGCTGAAG 84 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 ||||| || ||||| | || || ||| || | || || ||| | ||||||||| Sbjct 85 AAGATCCCTTCCACAGATGCAAAAGCGACGATTCGTTCACCAAAACTCGAGTTCTTGTCG 144 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || ||||||| |||||||||| | || ||||||||||| || || Sbjct 145 TTGATCCACTTCAGGGCCCAGTTTGCCTTCTTCCGTACACACGGCATCGTCTCAATCGC 203 >seq88159 Length=965 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 241501 CACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGC 241560 ||| || ||||||||| |||||| ||||| |||||||||||||| ||| ||| || Sbjct 131 CACCTTGTCCTCCAGCTTGCTGATGCGCTCCAGCTTGCGCCGGCGGCACTTGTGGGCGGC 190 Query 241561 CAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGAT 241620 | |||||||| | | ||| || |||| |||||| ||||||| ||||||||||| Sbjct 191 GATCCGGTTCCGCATGCGCTTCCGCTCCGACTTGATCGCCTCCTGGTGGTCCATGTCGAT 250 Query 241621 CGGAGA 241626 || || Sbjct 251 GGGCGA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925963619511040