Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq30684 158 8e-33 seq175707 132 3e-25 seq56399 132 3e-25 seq131350 123 2e-22 seq106878 116 2e-20 seq178845 111 1e-18 seq46392 111 1e-18 seq177247 107 1e-17 seq47169 107 1e-17 seq5841 104 2e-16 seq44539 102 5e-16 seq241202 100 2e-15 >seq30684 Length=2398 Score = 158 bits (174), Expect = 8e-33 Identities = 203/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 || ||||| ||| ||||| || ||| ||||| |||||||||||| | ||||||| Sbjct 1430 GGAGAAACCAAAACATTTTTCCCAGAAGAAATTAGTTCAATGGTTTTGTTGAGAATGAAA 1371 Query 474698 CAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCA 474757 ||||||| | |||||||| || || || || || || | ||||||||||| Sbjct 1370 GAAACCGCTGAAGCCTATCTTGGCAAAACTGTGACCGACGCCGTCGTCACTGTTCCAGCT 1311 Query 474758 TATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAAT 474817 ||||| || ||||||||||||||||| || || ||||| |||| || | ||| | ||| Sbjct 1310 TATTTCAACGATTCTCAACGTCAAGCTACCAAGGATGCTGGAACCATCTCCGGTTTGAAT 1251 Query 474818 GTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA- 474876 ||| | ||||| ||||||||||| || || || || ||||||| ||| | || ||||| Sbjct 1250 GTTCTCCGTATCATTAATGAACCGACTGCTGCTGCCATTGCTTACGGTTTGGACAAGAAA 1191 Query 474877 --TTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT 474911 | ||| | ||||| || ||||| || || |||| Sbjct 1190 GTTGGTGA-AGAGAAG--AACGTTTTGATTTTCGATT 1157 Score = 89.7 bits (98), Expect = 3e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTT-ATC--AGGTCAA 475852 |||||||| ||||| || ||||| ||||||||||| || |||||||| | | || |||| Sbjct 325 CCTGATGAGGCTGTCGCTTATGGCGCTGCTGTCCAGGCTGCTATTTTGAGCGGAGATCAA 266 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||| || || | | | || | ||| |||| || |||||||||| | ||| || Sbjct 265 TC---CGAAGAAGTACAAAGTCTTTTGCTTCTTGATGTTGCTCCACTTTCTCTTGGTATT 209 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| | ||| || | |||||| ||||| | || || || | ||| |||| Sbjct 208 GAAACTGCTGGTGGTGTGATGACTGCACTTATCACTCGTAACACCACTGTTCCAACCAAA 149 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 | || || || | ||||| ||||| || ||| | |||| ||||||| Sbjct 148 CAGTCTCGTGTTTTCACTACTTACTCTGACAACCAACCCGGTGTACTCATCCAA 95 Score = 86.0 bits (94), Expect = 4e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| |||||| |||| ||||| |||||| |||| || Sbjct 1875 GTTGAAATTATTGCCAATGACCAGGGTAATCGAACCACACCCAGTTATGTTGCTTTCACA 1816 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||||| | | ||||| ||||| || ||| | || | ||| || || || || Sbjct 1815 GACACTGAACGTTTGATTGGTGATGCAGCCAAAAACCAGGTTGCCATGAACCCGGTCAAC 1756 Query 474509 ACTATTTTTG 474518 ||| | |||| Sbjct 1755 ACTGTATTTG 1746 >seq175707 Length=3075 Score = 132 bits (146), Expect = 3e-25 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 474654 TTTCACC--GGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCT 474710 ||||||| |||| | || || ||| |||| |||||||| | || || ||| Sbjct 140 TTTCACCCCGGAAGAGATCAGCTCCATGATTTTGTTGAAAATGAAGGAGACGGCTGAGG- 198 Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||||||||| || || |||||||| || || |||||||| || | ||| ||||||| Sbjct 199 CATATCTTGGAAAAACTGTTACTGATGCTGTCATCACTGTTCCGGCTTGTTTCAATGATT 258 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 |||||||||| || ||||| || ||||| | |||| | ||| | || ||| | || || | Sbjct 259 CTCAACGTCAGGCCACTAAGGACGCGGGTACAATTTCCGGTATGAACGTTCTCCGAATCA 318 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| ||||| ||||| |||| || || ||||| || || Sbjct 319 TCAACGAACCGACAGCTGCCGCTATTGCCTACGGACTTGACAAAAA 364 >seq56399 Length=3075 Score = 132 bits (146), Expect = 3e-25 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 474654 TTTCACC--GGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCT 474710 ||||||| |||| | || || ||| |||| |||||||| | || || ||| Sbjct 140 TTTCACCCCGGAAGAGATCAGCTCCATGATTTTGTTGAAAATGAAGGAGACGGCTGAGG- 198 Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 ||||||||||| || || |||||||| || || |||||||| || | ||| ||||||| Sbjct 199 CATATCTTGGAAAAACTGTTACTGATGCTGTCATCACTGTTCCGGCTTGTTTCAATGATT 258 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 |||||||||| || ||||| || ||||| | |||| | ||| | || ||| | || || | Sbjct 259 CTCAACGTCAGGCCACTAAGGACGCGGGTACAATTTCCGGTATGAACGTTCTCCGAATCA 318 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| ||||| ||||| |||| || || ||||| || || Sbjct 319 TCAACGAACCGACAGCTGCCGCTATTGCCTACGGACTTGACAAAAA 364 >seq131350 Length=643 Score = 123 bits (136), Expect = 2e-22 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 474653 TTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCA 474712 |||| |||||| |||| || ||||| | | || |||||| | | ||| | Sbjct 230 TTTTATCCGGAAGAAATAAGCTCGATGGTACTTTCAAACATGAAAGATATTGCGGAAGCC 289 Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 |||||||| ||||| |||||||||| || || |||||||| ||||| ||||| Sbjct 290 TATCTTGGCGTTGAAGTTTCTGATGCAGTGATCACCGTTCCAGCTTATTTCTCAGATTCC 349 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 ||||| ||| ||||| |||||| || ||||||||||| |||| | ||||| Sbjct 350 CAACGACAATCAACTCGAGATGCTGGTTCTATTGCAGGTCTACATGTGGTGAAAATTATC 409 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 |||||||| || |||||||| |||||||||||||||| || Sbjct 410 AATGAACCCACGGCAGCCGCGATTGCTTATGGTCTTGACAA 450 >seq106878 Length=786 Score = 116 bits (128), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||||||||||| ||||| || ||||| ||||| || ||||| ||||||| Sbjct 202 ATGCAGTTGTTACTGTTCCAGCTTATTTCAACGATTCCCAACGCCAGGCAACCAAAGATG 143 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||| | |||||||| || || ||| | || |||||||| ||||| || || | Sbjct 142 CTGGTCAGATTTCTGGTCTTAACGTCTTGCGTGTAATCAATGAACCCACAGCCGCTGCCC 83 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAA 474886 |||| ||||| || || || | | |||||| Sbjct 82 TTGCCTATGGCCTCGACAAAACTGAGGACAAA 51 >seq178845 Length=945 Score = 111 bits (122), Expect = 1e-18 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 474673 TTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAA 474731 ||| ||||||||| || |||||||||| || ||| | ||||| || ||| | Sbjct 576 TTCTATGGTTTTATACAGGATGAAACAAATTGCAGAGA-CGTATCTCAATAAAACAGTTA 518 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 |||||| || || ||| ||||| |||||||||||||| ||||||||||| || |||| Sbjct 517 ATGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTACCAAAG 458 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 |||| |||| ||| || ||| | || ||| | || || | ||||| || ||||| || | Sbjct 457 ATGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAGCTGCTG 398 Query 474852 CACTTGCTTATGG 474864 | | || ||||| Sbjct 397 CTATAGCATATGG 385 >seq46392 Length=5330 Score = 111 bits (122), Expect = 1e-18 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 474673 TTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAA 474731 ||| ||||||||| || |||||||||| || ||| | ||||| || ||| | Sbjct 370 TTCTATGGTTTTATACAGGATGAAACAAATTGCAGAGA-CGTATCTCAATAAAACAGTTA 428 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 |||||| || || ||| ||||| |||||||||||||| ||||||||||| || |||| Sbjct 429 ATGATGCTGTGATCACTACCCCAGCCTATTTTAATGATTCACAACGTCAAGCTACCAAAG 488 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 |||| |||| ||| || ||| | || ||| | || || | ||||| || ||||| || | Sbjct 489 ATGCTGGAACAATCGCTGGTTTAAACGTTCTCCGAATCGTGAATGAGCCTACAGCTGCTG 548 Query 474852 CACTTGCTTATGG 474864 | | || ||||| Sbjct 549 CTATAGCATATGG 561 >seq177247 Length=926 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||||| ||||| | ||||| ||||| ||||| || || || ||||||||||| || Sbjct 199 GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACGTCAAGCTACC 140 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||||| || | || || || | ||||| || ||||| || ||| Sbjct 139 AAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGAACCTACCGCA 80 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| |||||||||| | || ||||| Sbjct 79 GCCGCTATTGCTTATGGCTTAGACAAGAA 51 >seq47169 Length=4500 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||||| ||||| | ||||| ||||| ||||| || || || ||||||||||| || Sbjct 1987 GTGACTGACGCAGTTGTAACTGTGCCAGCTTATTTCAACGACTCACAACGTCAAGCTACC 2046 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||||| || | || || || | ||||| || ||||| || ||| Sbjct 2047 AAAGATGCTGGTACCATTGCTGGCTTGAACGTCTTGAGAATTATCAACGAACCTACCGCA 2106 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| |||||||||| | || ||||| Sbjct 2107 GCCGCTATTGCTTATGGCTTAGACAAGAA 2135 >seq5841 Length=977 Score = 104 bits (114), Expect = 2e-16 Identities = 199/286 (70%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 475687 ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGA 475746 || ||| || |||||||||| ||||| |||||||| || | ||||| ||| | | | Sbjct 298 ATGACAGATCGATGAAATTGTACTTGTTGGAGGTTCCACTCGCATTCCTAAAGTTCAACA 239 Query 475747 AATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA--AATCCTGATGA 475803 | ||||| || | | || || || ||| |||| || |||| | |||||||| || Sbjct 238 ACTGCTT-CAGAGTTTCTTCAACGGAAAAGAGTTGAAC--AAGTCAATCAATCCTGACGA 182 Query 475804 AGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT---CAATCAGACGA 475860 || || || ||||| |||||||| |||| ||| ||||| | || ||||| || || Sbjct 181 GGCAGTCGCTTATGGTGCTGCTGTACAAGGCGCTGTTTTAACTGGGGACCAATCTGAGGA 122 Query 475861 GAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGT 475920 | || | | ||| ||| |||| ||| |||||||| | | ||||||||||| || Sbjct 121 AGTGCAAAGTC-TCTTG--CTTCTTGATGTAGCTCCACTTACTCTTGGTCTTGAAACGGT 65 Query 475921 TGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 || || | |||||| ||| ||||| | || || || ||||| Sbjct 64 GGGTGGTGTGATGACTTCTCTGATTGATCGTAACACAACTGTCCCA 19 >seq44539 Length=5866 Score = 102 bits (112), Expect = 5e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 817097 ATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACA 817156 || || | ||| ||||| ||||||||||| || |||||| |||| || ||| | || ||| Sbjct 763 ATTGACTATTCTTCTCCTAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGTTCAACA 822 Query 817157 ATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATA 817216 || ||||| || | | | | | | | ||||| | ||| ||| || ||| | Sbjct 823 ATCATTGGAGATTGTTTGGGAAACCTTTTTGAATATCTGGGACATGATGTTTTGAGACTT 882 Query 817217 AATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| ||||||| ||||||||||||||||||||| ||||||| Sbjct 883 AATCACGTTGGTGACTGGGGAACACAATTTGGTATGCTAATTGC 926 >seq241202 Length=389 Score = 100 bits (110), Expect = 2e-15 Identities = 125/168 (74%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 |||| ||| || ||||| ||||||||||||||||| || | | || |||||||||| Sbjct 326 AAAACGGTCGTGTTGAAATTATTGCCAATGACCAAGGAAACCGTATCACCCCATCATATG 267 Query 474438 TTTCTTTTACTG---AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CA 474493 | |||| || | || ||| | ||| ||||||||||| || || ||||| ||| | Sbjct 266 TGGCTTTCACCGCAGAAGGTGACCGTCTCATTGGAGATGCCGCCAAGAATCAA-CTGACC 208 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGT 474541 ||||| || | || ||| | |||||||| ||| || ||||||| ||| Sbjct 207 TCTAACCCCGAAAACACTGTATTTGATGCCAAACGACTGATTGGACGT 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3247663407290588