Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11070 87.8 2e-12 seq46785 84.2 3e-11 >seq11070 Length=7227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 75890 CTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAG 75949 ||| |||| |||| || || || || || |||||| | ||||| ||||||||||| | Sbjct 2966 CTCGAATCGCAGATAGAAACCGGGACTCCTTATATGGTGTACAAAGATGCTTGTAATAGA 3025 Query 75950 AAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTA 76009 ||| || ||| ||||| | ||||| || || || || |||||||| ||||| ||| | Sbjct 3026 AAGTCGAATCAACAGAATCTAGGAACGATTAAAAGTTCGAATCTTTGTACGGAGATTGTC 3085 Query 76010 GAGTACACAGATAAGGATGAG 76030 || || || ||||||||| Sbjct 3086 GAATATACCAGCAAGGATGAG 3106 >seq46785 Length=3947 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGC 65080 ||||||||| || ||||| |||| ||| | || |||| |||| || | || | Sbjct 177 GAAGAAGGCAAACTGGGCCCTGAAGTGGATCAACGACAAGAACTCGAGTTTTGGT-GAAC 119 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | | | || ||||| | |||||| || ||||||||| ||| || ||| ||||||| Sbjct 118 GAATCGTCGCTTTTGCATCTGTGGAAGGGATCTTCTTCAGCGGTTCGTTCGCTGCTATTT 59 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 ||| |||||||||| ||||||||||| |||||| Sbjct 58 TCTGGCTGAAGAAGCGAGGTCTCATGCCCGGCCTA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593003001189280