Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq384607 136 6e-26 seq444504 100 4e-15 seq46785 91.5 2e-12 >seq384607 Length=248 Score = 136 bits (150), Expect = 6e-26 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct 175 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCACCAGGGA 116 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| | ||||||||||||||| || |||| | ||| ||| | |||||| | Sbjct 115 GGAGCAGCCTCACGGCGGTCTGGATTTCCCGGGAGGTGATGGTGGATCTCTTGTTGTAGT 56 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 | ||||| ||| || ||||| | ||||||| || | | |||||| ||||| || Sbjct 55 GGGCCAGACGGGAGGACTCGGCGGCGATGCGCTCAAAGAGGTCGTTCACAAAGGA 1 >seq444504 Length=215 Score = 100 bits (110), Expect = 4e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || |||||||| || || ||| || ||| |||||| ||| || ||| | Sbjct 1 TACTTGGTCACTGCCTTGGTTCCTTCGCTGACAGCATGCTTGGCCAATTCACCAGGCAAG 60 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || || || |||||||| ||||| | |||||| || |||||| | || Sbjct 61 AGGAGACGAACTGCAGTCTGGATTTCGCGAGACGAGATCGTTTTCTTCTTGTTCTGGAGC 120 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || || || |||| |||| || |||| ||||||||||| || ||||||||| Sbjct 121 GAGAGACGCGAAGCTTCGGAAGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 180 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 || ||| | |||| |||| || || ||||| Sbjct 181 ATGCTCATGGCTTTGGACGAGACTCCGACATCGGG 215 >seq46785 Length=3947 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/208 (71%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 794353 CTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAA 794411 |||||||||||||| | ||| |||||||||||||| || |||||||| ||||| || Sbjct 1 CTGATCAATTCGTTCGAGTAAGTT-AGGCCGGGCATGAGACCTCGCTTCTTCAGCCAGAA 59 Query 794412 GATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCG 794471 || ||| ||| || ||| ||||| || || || | ||||| |||||| || Sbjct 60 AATAGCAGCGAACGAACCGCTGAAGAAGATCCCTTCCACAGATGCAAAAGCGACGATTCG 119 Query 794472 CTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531 || ||||| | | | || | |||||||||||||| ||||| | |||||| || Sbjct 120 TTCACCAAAACT---CGAGTTCTTGTCGTTGATCCACTTCAGGGCCCAGTTTGCCTTCTT 176 Query 794532 CCTCACCGAGGGCACCGTGTCGATGGCG 794559 || || | |||| ||| || || ||| Sbjct 177 CCGTACACACGGCATCGTCTCAATCGCG 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7865369468590359