Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq30684 131 1e-24 seq5841 120 2e-21 seq106878 116 3e-20 seq44539 114 1e-19 seq228302 113 3e-19 seq177247 104 2e-16 seq47169 104 2e-16 seq51213 102 6e-16 seq241202 96.9 3e-14 seq175707 96.9 3e-14 seq56399 96.9 3e-14 seq131350 95.1 9e-14 >seq30684 Length=2398 Score = 131 bits (144), Expect = 1e-24 Identities = 194/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 282293 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCA 282352 |||| ||| ||||| | || ||| | |||| | || || || | ||| || ||| Sbjct 1153 CCCAAATCGAAAATCAAAACGTTCTTCTCTTCACCAACTTTCTTGTCCAAACCGTAAGCA 1212 Query 282353 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 282412 | ||||||||||| ||||||||||| || | | |||||| | ||| | || |||| Sbjct 1213 ATGGCAGCAGCAGTCGGTTCATTAATGATACGGAGAACATTCAAACCGGAGATGGTTCCA 1272 Query 282413 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 282472 ||||| || || ||||| | ||| |||||||| ||||| || |||||||| | ||||| Sbjct 1273 GCATCCTTGGTAGCTTGACGTTGAGAATCGTTGAAATAAGCTGGAACAGTGACGACGGCG 1332 Query 282473 TCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATT 282532 || || || ||| |||| ||| || || |||| ||||||| | |||| |||| Sbjct 1333 TCGGTCACAGTTTTGCCAAGATAGGCTTCAGCGGTTTCTTTCATTCTCAACAAAACCATT 1392 Query 282533 GATGAAATTTGTTCTGGAGAATATTGCTTGGATTC 282567 || ||||| |||||| || || |||| ||| Sbjct 1393 GAACTAATTTCTTCTGGGAAAAATGTTTTGGTTTC 1427 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||| ||| || || | ||| | || | |||||||||||| ||||||| | Sbjct 1746 CAAATACAGTGTTGACCGGGTTCATGGCAACCTGGTTTTTGGCTGCATCACCAATCAAAC 1805 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| || ||||| || | |||||| || || || |||||||| || ||||| |||| Sbjct 1806 GTTCAGTGTCTGTGAAAGCAACATAACTGGGTGTGGTTCGATTACCCTGGTCATTGGCAA 1865 Query 282810 TAATTTCAAC 282819 |||||||||| Sbjct 1866 TAATTTCAAC 1875 >seq5841 Length=977 Score = 120 bits (132), Expect = 2e-21 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 281639 GTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAA 281698 |||||||| | |||||| | | ||||| | |||||| | ||||| | |||||||| | Sbjct 26 GTTGTGTTACGATCAATCAGAGAAGTCATCACACCACCCACCGTTTCAAGACCAAGAGTA 85 Query 281699 AGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA--- 281755 || |||| ||||||| || | | | |||| | || | |||| ||| | || Sbjct 86 AGTGGAGCTACATCAAGAAGCAAGAGACTTTGCACTT---CCTCAGATTGGTCCCCAGTT 142 Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 | || ||| |||| | |||||||||||| || || || || |||||||| | | | Sbjct 143 AAAACAGCGCCTTGTACAGCAGCACCATAAGCGACTGCCTCGTCAGGATTGATTGACTTG 202 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875 || | | ||| || ||||| ||| | ||| |||||| || |||||||| |||| Sbjct 203 TTCAACTCTTTTCCGTTGAAGAAACTCTGAAGCAGTTGTTGAACTTTAGGAATGCGAGTG 262 Query 281876 GATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 || |||||||| | ||||||||||| | |||| || Sbjct 263 GAACCTCCAACAAGTACAATTTCATCGATCTGTCAT 298 >seq106878 Length=786 Score = 116 bits (128), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| |||||||||||| | |||| | | | || | || |||||| | || Sbjct 10 ACATCAAAGGTTCCACCACCTAAATCATAGACA---GCAATGAT---TTTGTCCTCAGTT 63 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || || ||||| |||| ||||| || || |||||||| || | | ||| || ||| Sbjct 64 TTGTCGAGGCCATAGGCAAGGGCAGCGGCTGTGGGTTCATTGATTACACGCAAGACGTTA 123 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||| ||| || |||||||| || || || | ||| |||||||| ||||| || Sbjct 124 AGACCAGAAATCTGACCAGCATCTTTGGTTGCCTGGCGTTGGGAATCGTTGAAATAAGCT 183 Query 282455 GGAACAGTAATAACGGCAT 282473 |||||||||| ||| |||| Sbjct 184 GGAACAGTAACAACTGCAT 202 >seq44539 Length=5866 Score = 114 bits (126), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 637129 GATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATT 637188 || ||||||||||| |||||||| ||||| |||||| |||| ||||| | ||||| || Sbjct 766 GACTATTCTTCTCCTAATATTGCAAAAGAGATGCATGTTGGTCATTTGCGTTCAACAATC 825 Query 637189 ATTGGTGAATCTATTTGTAGGGTATTAGAA-ATGTGTGGACACGATGTTTATCGTATTAA 637247 ||||| || | | | | | | || ||| || || ||||| ||||||| | |||| Sbjct 826 ATTGGAGATTGTTTGGGAAACCTTTTTGAATATCTG-GGACATGATGTTTTGAGACTTAA 884 Query 637248 TCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 ||| || ||||| |||||||| ||||| |||||| ||||||| Sbjct 885 TCACGTTGGTGACTGGGGAACACAATTTGGTATGCTAATTGC 926 >seq228302 Length=411 Score = 113 bits (124), Expect = 3e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| || | |||||| ||||| || || ||||| || | | |||| Sbjct 296 TTTTTGTCCAAACCATAGGCGATAGCAGCGGCAGTGGGCTCGTTAATGATACGAAGAACA 237 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||| || |||| ||||| || |||||||| | ||| ||||| || ||||| Sbjct 236 TTTAAGCCACTGATGGTTCCAGCATCCTTGGTGGCTTGCCGTTGGGAATCATTGAAATAA 177 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || ||||||| ||| || || | || | ||| | ||||| || |||| Sbjct 176 GCTGGCACAGTAACAACAGCGTCGGACACAGTTGCTCCGAGATAAGATTCAGCAGTTTCC 117 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 |||||||| | ||||||||||| ||||| ||| |||| Sbjct 116 TTCATTTTCATCAAAATCATTGAACTAATTTCTTCAGGAG 77 >seq177247 Length=926 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||| || || || ||||| || ||||||||||| || || | |||||| Sbjct 63 CCATAAGCAATAGCGGCTGCGGTAGGTTCGTTGATAATTCTCAAGACGTTCAAGCCAGCA 122 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || |||||||| || ||||| | |||||| ||||| ||||| || || ||||| Sbjct 123 ATGGTACCAGCATCTTTGGTAGCTTGACGTTGTGAGTCGTTGAAATAAGCTGGCACAGTT 182 Query 282464 ATAACGGCATCTGTTAC 282480 | ||| || || || || Sbjct 183 ACAACTGCGTCAGTCAC 199 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||||||| ||| | || || | |||| |||| | ||||||||| ||||| || || Sbjct 729 CAAAAATAGTGTTGATGGGGTTCATTGCAACTTGGTTTTTGGCTGCGTCTCCGATAAGTC 788 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || || || ||||| ||||| || || || ||||| |||||||||| Sbjct 789 TTTCGGTATCGGTGAAACCGACATAGCTGGGAGTCGTTCGGTTTCCTTGGTCATTCGCAA 848 Query 282810 TAATTTCAAC 282819 |||| ||||| Sbjct 849 TAATCTCAAC 858 >seq47169 Length=4500 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||| || || || ||||| || ||||||||||| || || | |||||| Sbjct 2123 CCATAAGCAATAGCGGCTGCGGTAGGTTCGTTGATAATTCTCAAGACGTTCAAGCCAGCA 2064 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || |||||||| || ||||| | |||||| ||||| ||||| || || ||||| Sbjct 2063 ATGGTACCAGCATCTTTGGTAGCTTGACGTTGTGAGTCGTTGAAATAAGCTGGCACAGTT 2004 Query 282464 ATAACGGCATCTGTTAC 282480 | ||| || || || || Sbjct 2003 ACAACTGCGTCAGTCAC 1987 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||||||| ||| | || || | |||| |||| | ||||||||| ||||| || || Sbjct 1457 CAAAAATAGTGTTGATGGGGTTCATTGCAACTTGGTTTTTGGCTGCGTCTCCGATAAGTC 1398 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || || || ||||| ||||| || || || ||||| |||||||||| Sbjct 1397 TTTCGGTATCGGTGAAACCGACATAGCTGGGAGTCGTTCGGTTTCCTTGGTCATTCGCAA 1338 Query 282810 TAATTTCAAC 282819 |||| ||||| Sbjct 1337 TAATCTCAAC 1328 >seq51213 Length=3572 Score = 102 bits (112), Expect = 6e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 |||||||||| |||||| ||||||||||| || || || | | |||||| | ||| Sbjct 1577 CCATACGCAATAGCAGCTGCAGTTGGTTCGTTGATGATCCGAAGAACATTCAAGCCACTG 1518 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || |||||||| || ||||||| ||| |||||||| || || || || || || Sbjct 1517 ATGGTGCCAGCATCTTTGGTAGCTTGTCGTTGCGAATCGTTGAAGTAAGCTGGTACGGTC 1458 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | ||| ||||| || || ||| || | || || ||||||| |||||||| Sbjct 1457 ACAACAGCATCAGTCACACTTTTACCGAGGTATGCTTCAGCTGTTTCCTTCATTTT 1402 >seq241202 Length=389 Score = 96.9 bits (106), Expect = 3e-14 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 ||||| | ||||| | ||||| | ||| ||| |||| | ||| |||| | | Sbjct 105 TAACTGTGAATGGGAAGTATTTGAGATCACTTTGTACACCCTTGTCGCTAAATAGACGTC 164 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATATTTG 282730 |||| | |||||| |||||||| | ||| || || ||| | ||| ||||| ||| Sbjct 165 CAATCAGTCGTTTGGCATCAAATACAGTGTTTTCGGGGTTAGAGGTCAG-TTGATTCTTG 223 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTG---TAAATGAAACATATGATGGAGTTGTG 282787 || ||||||||||| ||| | || |||| | || | ||||||||||| || | Sbjct 224 GCGGCATCTCCAATGAGACGGTCACCTTCTGCGGTGAAAGCCACATATGATGGGGTGATA 283 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 || || ||||| ||||| |||||||||||||| ||| |||| |||| || |||| Sbjct 284 CGGTTTCCTTGGTCATTGGCAATAATTTCAACACGACCGTTTTTGTATACTCCGACAC 341 >seq175707 Length=3075 Score = 96.9 bits (106), Expect = 3e-14 Identities = 215/320 (67%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 ||||| || || |||||||| || || | || | || ||||| || ||||| | Sbjct 2782 TGATTGTCCGAGTAAGTTGTGAAGACACGTGACTGCTTGGTAGGAACGGTGGTGTTACGC 2723 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 || || | | |||||| | || ||||| || || | |||||| |||||||||| ||| Sbjct 2722 TCGATTAAAGCGGTCATCACTCCGCCAGCAGTCTCAATACCAAGCGAAAGAGGAGCAACA 2663 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | |||| | | || | | ||| || | |||| ||||| |||||||| Sbjct 2662 TCTAGGAGGAGCACGCTCTGCACCTCTTCGGACGTATCACCACTCAGAATTGCTGCTTGC 2603 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||| |||||||| || ||||| ||||||||||| | | | || |||| ||| Sbjct 2602 ACAGCGGCACCATACGCCACAGCCTCATCAGGATTGATTGACTTGTTCAGTTCTTTGTTG 2543 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 |||||||| | || || | ||| || || || || |||| || ||||| || | Sbjct 2542 TTGAAAAAGTCCCTGAGCAGCT-TCTGAACTTTGGGGATTCGAGTAGAGCCTCCTACCAG 2484 Query 281890 TACAATTTCATGCACCTGTG 281909 ||| | || || | ||||| Sbjct 2483 TACCACATCGTGGATCTGTG 2464 >seq56399 Length=3075 Score = 96.9 bits (106), Expect = 3e-14 Identities = 215/320 (67%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 ||||| || || |||||||| || || | || | || ||||| || ||||| | Sbjct 2782 TGATTGTCCGAGTAAGTTGTGAAGACACGTGACTGCTTGGTAGGAACGGTGGTGTTACGC 2723 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 || || | | |||||| | || ||||| || || | |||||| |||||||||| ||| Sbjct 2722 TCGATTAAAGCGGTCATCACTCCGCCAGCAGTCTCAATACCAAGCGAAAGAGGAGCAACA 2663 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | |||| | | || | | ||| || | |||| ||||| |||||||| Sbjct 2662 TCTAGGAGGAGCACGCTCTGCACCTCTTCGGACGTATCACCACTCAGAATTGCTGCTTGC 2603 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||| |||||||| || ||||| ||||||||||| | | | || |||| ||| Sbjct 2602 ACAGCGGCACCATACGCCACAGCCTCATCAGGATTGATTGACTTGTTCAGTTCTTTGTTG 2543 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 |||||||| | || || | ||| || || || || |||| || ||||| || | Sbjct 2542 TTGAAAAAGTCCCTGAGCAGCT-TCTGAACTTTGGGGATTCGAGTAGAGCCTCCTACCAG 2484 Query 281890 TACAATTTCATGCACCTGTG 281909 ||| | || || | ||||| Sbjct 2483 TACCACATCGTGGATCTGTG 2464 >seq131350 Length=643 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| ||||||||||| |||| || || || || |||||||| |||||| ||| |||| Sbjct 451 TTTGTCAAGACCATAAGCAATCGCGGCTGCCGTGGGTTCATTGATAATTTTCACCACATG 392 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| ||||| || |||||| ||| | ||||| ||| ||||| ||||| || Sbjct 391 TAGACCTGCAATAGAACCAGCATCTCGAGTTGATTGTCGTTGGGAATCTGAGAAATAAGC 332 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||||| || || || ||||| | ||||| Sbjct 331 TGGAACGGTGATCACTGCATCAGAAACTTC 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3717148824115506