Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq70651 95.1 2e-14 seq51577 95.1 2e-14 seq78050 89.7 7e-13 seq93276 86.0 8e-12 seq15508 82.4 1e-10 >seq70651 Length=516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| |||||||||| ||||| | |||| |||| |||||||| Sbjct 16 TAGTCCTCGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGA 75 Query 8715 TTCCCCGACGAGGAG 8729 ||||| |||| |||| Sbjct 76 TTCCCTGACGGGGAG 90 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | |||| |||| ||||||||| Sbjct 17 AGTCCTCGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGAT 76 Query 11787 TCCCCGACGAGGAG 11800 |||| |||| |||| Sbjct 77 TCCCTGACGGGGAG 90 >seq51577 Length=797 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| |||||||||| ||||| | |||| |||| |||||||| Sbjct 601 TAGTCCTCGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGA 660 Query 8715 TTCCCCGACGAGGAG 8729 ||||| |||| |||| Sbjct 661 TTCCCTGACGGGGAG 675 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | |||| |||| ||||||||| Sbjct 602 AGTCCTCGTTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGAT 661 Query 11787 TCCCCGACGAGGAG 11800 |||| |||| |||| Sbjct 662 TCCCTGACGGGGAG 675 >seq78050 Length=1135 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||||| |||||||||||| ||||| |||| ||||| | |||| |||||||||| | Sbjct 810 CCAGTCCTCGCTAGTATAGTGGTGAGTATTCCCGACTGTCACTCGGGCGACCGGGGTTAG 751 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||| || |||| Sbjct 750 ATTCCCCGGCGGGGAG 735 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||||||||| ||||| Sbjct 806 TCCTCGCTAGTATAGTGGTGAGTATTCCCGACTGTCACTCGGGCGACCGGGGTTAGATTC 747 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 746 CCCGGCGGGGAG 735 >seq93276 Length=904 Score = 86.0 bits (94), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708 || |||||| ||| |||||||||||||| |||||||||| |||| | |||| ||| || Sbjct 774 ATACCTTAT-CCTTGTTAGTATAGTGGTGAGTATTCCCGCCTGTTACGCGGGTGACATGG 832 Query 8709 GTTCGATTCCCCGACGAGGAGC 8730 |||||||||||||||| || || Sbjct 833 GTTCGATTCCCCGACGGGGCGC 854 >seq15508 Length=1540 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709 |||| |||| |||||||||||||| ||| ||| | ||||| | |||| |||||||| Sbjct 898 TGCCATATTGTATGTTAGTATAGTGGTGGGTAATCCTGCCTGTCACGCGGGCGACCGGGG 839 Query 8710 TTCGATTCCCCGACGAGGAG 8729 ||||||||||||||| |||| Sbjct 838 TTCGATTCCCCGACGGGGAG 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648941759202640