Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq448081 118 3e-22 >seq448081 Length=213 Score = 118 bits (130), Expect = 3e-22 Identities = 158/211 (75%), Gaps = 13/211 (6%) Strand=Plus/Plus Query 18143 CATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGT 18202 |||||||||| |||||||| ||||| ||||| ||||||||| || ||||||||||||| Sbjct 10 CATCCACGCCGATGTGCGCCTTCATCCCGAAGAACCACTGGTTGCCCTTCTTGGTCTGGT 69 Query 18203 GCATCTCGGGGTCGCGCTTGCCGCTGCC--ATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260 ||||| | || ||||||| || | ||| |||||||||||||| ||||| || | Sbjct 70 GCATCGCCGGATCGCGCTCGC--CCGCCTTGTTCTTGGTCGAGCTCGGCGCACTGATGAT 127 Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGG--TAGCCCTTCGCACTG-AGTTGCGC 18317 || ||| || || | ||||| | || ||||| || || | || ||| || || || Sbjct 128 CGTGGCATC-ACGATCGTGC---CACTGCGCAGGCTCAGGCCCTTGCGCTGAAGATGGGC 183 Query 18318 GTTGACCGTCT-GCAGAAATTGCTCGGCCAG 18347 ||||||| || | ||| || ||||||||| Sbjct 184 GTTGACCTGCTCGAAGAGCTT-CTCGGCCAG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127158467168408